DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG43902 and npm1

DIOPT Version :10

Sequence 1:NP_572608.2 Gene:CG43902 / 31948 FlyBaseID:FBgn0264503 Length:1220 Species:Drosophila melanogaster
Sequence 2:NP_988883.1 Gene:npm1 / 394478 XenbaseID:XB-GENE-1019571 Length:304 Species:Xenopus tropicalis


Alignment Length:367 Identity:65/367 - (17%)
Similarity:104/367 - (28%) Gaps:172/367 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 LEEDDDASDAADIILESQRPTSRNFSVYLDAKKYQNSNNKKRSKEQKKNNISHHNYKLKNNKENN 207
            :|:..|....|.:     ||.:..|...|.|.|                    ..|..|...:.|
 Frog     1 MEDSMDMDSIAPL-----RPQNFLFGCELKADK--------------------REYSFKVEDDEN 40

  Fly   208 HHRLA----KEAAAGKSEIETV----------------------------LGG------------ 228
            .|:|:    ...|:.|.|:..|                            |||            
 Frog    41 EHQLSLRTVSVGASAKDELHVVEAEGINYEGKTIKITLASLKPSVQPTVSLGGFEITPPVILRLK 105

  Fly   229 ---GTKFTSGDEQPQLEDREQVEHEENANFGRQSFAYKKLKNMHEQQSQQDKKRGDDGDEVDLLD 290
               |..:.||.....|||.|..:.|:..               |:..|.::.||           
 Frog   106 SGSGPVYVSGQHLVALEDLESTDDEDEE---------------HDVPSPKNAKR----------- 144

  Fly   291 GEYPPSQLFDAIEILNERKFNKPSAQSTGKSRPQLQKKDKDKDQMKQEQVQEQEQHKSRQVDEAI 355
                                   :|.......|:           |:.:::|             
 Frog   145 -----------------------TASDAASKVPR-----------KKTRLEE------------- 162

  Fly   356 GDIEDNLDNDEILPTNNGEDEDDGDDADIDDDEDIKSAIDNDELAKKYPVA-----TSTTTKVPT 415
               ||..|:||    ::.:|:||.::.|.|:||:.::.:...:|..|...|     ....:::||
 Frog   163 ---EDEADSDE----DDDDDDDDEEEDDEDEDEEDETPVKKTDLPTKPKAAQKLNHNGKASELPT 220

  Fly   416 TLATSKTTSRSSSSSTTTTTMATSTTATSPSPSTTTTKPRTP 457
            .|.|.||..:.....|              .|.|..| |:||
 Frog   221 PLKTPKTPEQKGKQDT--------------KPQTPKT-PKTP 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43902NP_572608.2 None
npm1NP_988883.1 Nucleoplasmin 19..119 CDD:460792 19/119 (16%)
gly_rich_SclB <225..247 CDD:468478 7/36 (19%)
NPM1-C 251..299 CDD:465081
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.