DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoU and cdc42l2

DIOPT Version :9

Sequence 1:NP_001036266.1 Gene:RhoU / 31945 FlyBaseID:FBgn0083940 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_021325487.1 Gene:cdc42l2 / 556226 ZFINID:ZDB-GENE-060312-21 Length:209 Species:Danio rerio


Alignment Length:187 Identity:77/187 - (41%)
Similarity:107/187 - (57%) Gaps:9/187 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   383 KKAIAQPQPSIKCVLVGDGAVGKTNLILSYLENRFNPEHIPTASDIYNADVNVNESPVHLTICDT 447
            |:.:|....:||||:|||.|||||.|::|: .|:|..|  ||..:..:..|.:...|..:.:.:.
Zfish    18 KQLVATAMSTIKCVVVGDEAVGKTCLLVSF-TNKFPSE--PTVFNTQSVTVMMGGEPYTIRLFNA 79

  Fly   448 AGQDTLDPLRELCYPDSDVFLLCFSVVKPETFRAIKTKWAPK--FAKTKAALILVGTQADLRTSP 510
            ||||.|.||.   ||.:||||:|||||...:|..:|.||.|:  |...|...:|||||.|||..|
Zfish    80 AGQDQLRPLN---YPQTDVFLVCFSVVSLSSFENVKEKWVPEITFYAPKTPFLLVGTQIDLRDDP 141

  Fly   511 NVLNKLQTNGEEAISYADAWDLATTIGA-KYIETSSATQDKVKDVFDTAIWEGLVPT 566
            ..:.:|..|.::.|....|..||..:.| ||:|.|:.|...:|:|||.||...|.|:
Zfish   142 VTVARLAKNKQKPIKPEAAEKLARELKAVKYVECSALTLKGLKNVFDEAILAALQPS 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoUNP_001036266.1 Wrch_1 393..562 CDD:133330 73/171 (43%)
RHO 395..559 CDD:197554 69/166 (42%)
cdc42l2XP_021325487.1 P-loop_NTPase 27..195 CDD:328724 73/173 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1091615at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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