DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoU and Rhobtb3

DIOPT Version :10

Sequence 1:NP_001036266.1 Gene:RhoU / 31945 FlyBaseID:FBgn0083940 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001101115.1 Gene:Rhobtb3 / 309922 RGDID:1311683 Length:611 Species:Rattus norvegicus


Alignment Length:259 Identity:49/259 - (18%)
Similarity:82/259 - (31%) Gaps:91/259 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 VALGVGGGPFIFGIAPEQQVTDYGSNPLPPTPPQLKQQSVISRSPLQQSLSDTSAASSGKGSKFL 355
            ||||..|..|.....|...:..|                 :.||||          .||..|..|
  Rat     6 VALGNEGDTFHQDNRPSGLIRTY-----------------LGRSPL----------VSGDESSLL 43

  Fly   356 LRKRKSKKTTAAAAATTEAATTAKKDGKKAIAQPQPSIKCVLVGDGAVGKTNLILSYLENRFNPE 420
            |.           ||:|.|        :....:.|.|         |.|...|::          
  Rat    44 LN-----------AASTVA--------RPVFTEYQAS---------AFGNVKLVV---------- 70

  Fly   421 HIPTASDIYNADVNVNESPVHLTICDTAGQDTLDPLRELCYPDSDVFLLCFSVVKPETFRAIKTK 485
            |.....||:::|...:.:.:                     ..:|:.::.::|....:|..:|..
  Rat    71 HDCPVWDIFDSDWYTSRNLI---------------------GGADIIVIKYNVNDKFSFHEVKDN 114

  Fly   486 WAP--KFAKTKAALIL--VGTQADLRTSPNVLNKLQTNGEEAISYADAWDLATTIGAKYIETSS 545
            :.|  |.|.....:|:  |||:.: ...|.......::....::..:...||..:||.|:|..|
  Rat   115 YIPVIKRASNSVPVIIAAVGTRQN-EELPCTCPLCTSDRGSCVTTTEGIQLAKELGATYLELHS 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoUNP_001036266.1 Wrch_1 393..562 CDD:133330 26/157 (17%)
Rhobtb3NP_001101115.1 P-loop containing Nucleoside Triphosphate Hydrolases 34..174 CDD:476819 36/209 (17%)
BTB1_POZ_RHOBTB3 236..393 CDD:349666
BTB2_POZ_RHOBTB3 410..519 CDD:349669
BACK_RHOBTB3 529..611 CDD:350607
Blue background indicates that the domain is not in the aligned region.

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