DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoU and Rhobtb1

DIOPT Version :10

Sequence 1:NP_001036266.1 Gene:RhoU / 31945 FlyBaseID:FBgn0083940 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_001101092.1 Gene:Rhobtb1 / 309722 RGDID:1306871 Length:695 Species:Rattus norvegicus


Alignment Length:199 Identity:69/199 - (34%)
Similarity:94/199 - (47%) Gaps:29/199 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   392 SIKCVLVGDGAVGKTNLILSYLEN------RFNPEHIPT--ASDIY---------NADVNVNESP 439
            :||||:|||.|||||.||.:...|      :....|:||  |.|.|         :.|| |:|..
  Rat    14 TIKCVVVGDNAVGKTRLICARACNTTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDV-VDEVS 77

  Fly   440 VHLTICDTAGQDTLDPLRELCYPDSDVFLLCFSVVKPETFRAIKTKWAP--KFAKTKAALILVGT 502
            :.|.:.||.|....|  |...|..|||.:||||:..|.:...:||.|..  |....:..::|||.
  Rat    78 ISLRLWDTFGDHHKD--RRFAYGRSDVVVLCFSIANPNSLNHVKTMWYQEIKHFCPRTPVVLVGC 140

  Fly   503 QADLRTSP-NVLNKLQTNGEEAISYAD------AWDLATTIGAKYIETSSATQDKVKDVFDTAIW 560
            |.|||.:. ..:|:.:......|...|      ..::|..:|..|.|||...|..:|||||.||.
  Rat   141 QLDLRYADLEAVNRARRPLARPIKRGDILPPEKGREVAKELGIPYYETSVFDQFGIKDVFDNAIR 205

  Fly   561 EGLV 564
            ..|:
  Rat   206 AALI 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoUNP_001036266.1 Wrch_1 393..562 CDD:133330 68/194 (35%)
Rhobtb1NP_001101092.1 RhoBTB 13..207 CDD:133275 68/195 (35%)
BTB_POZ 248..459 CDD:453885
BTB_POZ 464..589 CDD:453885
BACK_RHOBTB1 592..691 CDD:350605
Blue background indicates that the domain is not in the aligned region.

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