DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment RhoU and Rhoj

DIOPT Version :9

Sequence 1:	NP_001036266.1	Gene:	RhoU / 31945	FlyBaseID:	FBgn0083940	Length:	582	Species:	Drosophila melanogaster
Sequence 2:	NP_001008321.1	Gene:	Rhoj / 299145	RGDID:	1310528	Length:	211	Species:	Rattus norvegicus

Alignment Length:	170	Identity:	75/170 - (44%)
Similarity:	103/170 - (60%)	Gaps:	3/170 - (1%)

- Green bases have known domain annotations that are detailed below.

  Fly   393 IKCVLVGDGAVGKTNLILSYLENRFNPEHIPTASDIYNADVNVNESPVHLTICDTAGQDTLDPLR 457
            :|||:|||||||||.|::||..:.|..|::||..|.|...|.|......|.:.|||||:..:.||
  Rat    22 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLR 86

  Fly   458 ELCYPDSDVFLLCFSVVKPETFRAIKTKWAP--KFAKTKAALILVGTQADLRTSPNVLNKLQTNG 520
            .|.||::||||:|||||.|.::..::.:|.|  |........:|:|||.|||..|..|.:|....
  Rat    87 PLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMK 151

  Fly   521 EEAISYADAWDLATTIGAK-YIETSSATQDKVKDVFDTAI 559
            |:.::|.....||..|||: |:|.|:.||..:|.|||.||
  Rat   152 EKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAI 191

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
RhoU	NP_001036266.1	Wrch_1	393..562	CDD:133330	75/170 (44%)
RhoU	NP_001036266.1	RHO	395..559	CDD:197554	72/166 (43%)
Rhoj	NP_001008321.1	P-loop_NTPase	22..195	CDD:422963	75/170 (44%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0393
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1091615at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.910