DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoU and crp-1

DIOPT Version :9

Sequence 1:NP_001036266.1 Gene:RhoU / 31945 FlyBaseID:FBgn0083940 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_505688.1 Gene:crp-1 / 179462 WormBaseID:WBGene00012532 Length:187 Species:Caenorhabditis elegans


Alignment Length:168 Identity:53/168 - (31%)
Similarity:90/168 - (53%) Gaps:12/168 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   393 IKCVLVGDGAVGKTNLILSYLENRFNPEHIPTASDIYNADVNVNESPVHLTICDTAGQDTLDPLR 457
            :|.|:|||...|||:|:::|.:.:|...:..|..|.:...|:::.....:.:.|||||...:.:|
 Worm     5 LKLVVVGDTYTGKTSLLVAYTKKQFLDNYTTTVFDNWAVSVHIDNKNYAVNLFDTAGQGNYEQIR 69

  Fly   458 ELCYPDSDVFLLCFSVVKPETFRAIKTKWAP---KFAKTKAALILVGTQADLRTSPNVLNKLQTN 519
            .|.||.::|||:|||::..:|..:.::.|.|   |:|.....::||||:.||....:..|.:..:
 Worm    70 CLSYPHANVFLVCFSMIDRKTLESCRSTWIPEIRKYAGDNVPIMLVGTKNDLVDDADSRNTVTED 134

  Fly   520 GEEAISYADAWDLATTIGA-KYIETSSATQDKVKDVFD 556
                  ||..  :|..||. |:...|:.|...:|.|||
 Worm   135 ------YAKR--VAHEIGCHKFYSCSALTHKGLKRVFD 164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoUNP_001036266.1 Wrch_1 393..562 CDD:133330 53/168 (32%)
RHO 395..559 CDD:197554 52/166 (31%)
crp-1NP_505688.1 Rho 5..169 CDD:206641 53/168 (32%)
RHO 7..171 CDD:197554 52/166 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1091615at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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