DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoU and rhobtb1

DIOPT Version :9

Sequence 1:NP_001036266.1 Gene:RhoU / 31945 FlyBaseID:FBgn0083940 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_003199615.1 Gene:rhobtb1 / 100537290 ZFINID:ZDB-GENE-130530-871 Length:687 Species:Danio rerio


Alignment Length:199 Identity:69/199 - (34%)
Similarity:94/199 - (47%) Gaps:29/199 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   392 SIKCVLVGDGAVGKTNLILSYLEN------RFNPEHIPT--ASDIY---------NADVNVNESP 439
            :||||:|||.|||||.||.:...|      :....|:||  |.|.|         :.|| |::..
Zfish    10 TIKCVVVGDNAVGKTRLICARACNTTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDV-VDDVS 73

  Fly   440 VHLTICDTAGQDTLDPLRELCYPDSDVFLLCFSVVKPETFRAIKTKW--APKFAKTKAALILVGT 502
            |.|.:.||.|....|  |...|..|||.:||||:..|.:...:||.|  ..|....:..:||||.
Zfish    74 VSLRLWDTFGDHHKD--RRFAYGRSDVVVLCFSIANPNSLHHVKTMWYLEIKHFCPRTPVILVGC 136

  Fly   503 QADLRTSP-NVLNKLQTNGEEAISYAD------AWDLATTIGAKYIETSSATQDKVKDVFDTAIW 560
            |.|||.:. ..:|:.:......|...|      ..::|..:|..|.|||...|..:||:||.||.
Zfish   137 QLDLRYADLEAVNRARRPLSRPIKPGDILPPESGREVAKELGIPYYETSVFDQFGIKDIFDNAIR 201

  Fly   561 EGLV 564
            ..|:
Zfish   202 AALI 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoUNP_001036266.1 Wrch_1 393..562 CDD:133330 68/194 (35%)
RHO 395..559 CDD:197554 64/189 (34%)
rhobtb1XP_003199615.1 RhoBTB 9..203 CDD:133275 68/195 (35%)
BTB 355..446 CDD:333434
BTB 477..569 CDD:197585
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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