DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoU and rhog

DIOPT Version :9

Sequence 1:NP_001036266.1 Gene:RhoU / 31945 FlyBaseID:FBgn0083940 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_004920315.1 Gene:rhog / 100489878 XenbaseID:XB-GENE-22063125 Length:191 Species:Xenopus tropicalis


Alignment Length:184 Identity:79/184 - (42%)
Similarity:111/184 - (60%) Gaps:8/184 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   392 SIKCVLVGDGAVGKTNLILSYLENRFNPEHIPTASDIYNADVNVNESPVHLTICDTAGQDTLDPL 456
            |||||:|||||||||.|::.|..|.|..|:|||..|.|:|..:|:...|.|.:.|||||:..|.|
 Frog     3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTSVDGRTVSLNLWDTAGQEEYDRL 67

  Fly   457 RELCYPDSDVFLLCFSVVKPETFRAIKTKWAPKFAK--TKAALILVGTQADLRTSPNVLNKLQTN 519
            |.|.||.::||::|||:..|.::..:|.||.|:...  ....::||||:.|||.:.:|:.||:..
 Frog    68 RTLSYPQTNVFIICFSIASPTSYENVKHKWYPEVGHHCPNVPILLVGTKKDLRNNADVMKKLKEQ 132

  Fly   520 GEEAISYADAWDLATTIGA-KYIETSSATQDKVKDVFDTAIWEGLVPTTLPPTP 572
            .:..|:.....:||..|.| ||:|.|:..||.:|:||..|     |...|.|||
 Frog   133 NQMPITNHQGGNLAKQIHAVKYMECSALNQDGIKEVFAEA-----VRAVLNPTP 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoUNP_001036266.1 Wrch_1 393..562 CDD:133330 73/171 (43%)
RHO 395..559 CDD:197554 70/166 (42%)
rhogXP_004920315.1 RhoG 1..191 CDD:133277 79/184 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1091615at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.