DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG15312 and Ncam1

DIOPT Version :10

Sequence 1:NP_001245603.1 Gene:CG15312 / 31940 FlyBaseID:FBgn0030174 Length:464 Species:Drosophila melanogaster
Sequence 2:XP_006243048.1 Gene:Ncam1 / 24586 RGDID:67378 Length:1135 Species:Rattus norvegicus


Alignment Length:552 Identity:90/552 - (16%)
Similarity:155/552 - (28%) Gaps:257/552 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 NEYATDKGGNVSIPCIAQG----NIMW-----------------------------VKEHGNNST 64
            |:.|.:....|::.|.|.|    :|.|                             |:.|...|:
  Rat   316 NQTAMELEEQVTLTCEASGDPIPSITWRTSTRNISSEEKASWTRPEKQETLDGHMVVRSHARVSS 380

  Fly    65 IVQTGRVLVLRNVSTTDAGIYVCFAS----------------VPR-------------------- 93
                   |.|:::..||||.|:|.||                .|:                    
  Rat   381 -------LTLKSIQYTDAGEYICTASNTIGQDSQSMYLEVQYAPKLQGPVAVYTWEGNQVNITCE 438

  Fly    94 ----PSTTAT---------SATTSPQNLQDK------ETRPLEDEDDGQGESVSPKDDQLKEAEM 139
                ||.|.:         |:..|...:.:.      |..|..:.|.|.....:      .....
  Rat   439 VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA------VNRIG 497

  Fly   140 EEEVEYLAHQRTKLIVRTVPGPVS----QLYFKASTILGFLIWRFNKTQ-SGGYPVRSFTAEYRN 199
            :|.:|::      |:....|...|    :.|...:.:      :|::.: :||.|:..:.||:::
  Rat   498 QESLEFI------LVQADTPSSPSIDRVEPYSSTAQV------QFDEPEATGGVPILKYKAEWKS 550

  Fly   200 VSYKTPPANASFEHAW---------SRMDPINIAFNVRQMEVYRLAPNTTYEFRIWANNELGSGE 255
            :.          |.||         :.|:.|        :.:..|.|.|.|..|:.|.|..|.||
  Rat   551 LG----------EEAWHSKWYDAKEANMEGI--------VTIMGLKPETRYAVRLAALNGKGLGE 597

  Fly   256 V-VTTNVTTLP-------------------ETKEEDLIRLIKPD--------------------- 279
            : ..|...|.|                   |......:.|||.|                     
  Rat   598 ISAATEFKTQPVHSPPPREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVKYRAKLASEW 662

  Fly   280 -----------------LD-NFDPRIWIVA----------------------------------V 292
                             || |.:..:::||                                  .
  Rat   663 KPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTSAQPTAIPANGSPTAGLST 727

  Fly   293 SIVLGTLVILAIGLCIVLSKECYQSAQMELQDGWDSIELIPNIILNPGFSESDGGPEPGGQGHGG 357
            ..::|.|:::.:.|.:|:...||         ..:...|:..|.:|     ..|...||.:|...
  Rat   728 GAIVGILIVIFVLLLVVMDITCY---------FLNKCGLLMCIAVN-----LCGKAGPGAKGKDM 778

  Fly   358 SAGDQDAGEDDDDDVAMPFPRTIIFGQHHRTP 389
            ..|.....:|:..:     |...:..:..|||
  Rat   779 EEGKAAFSKDESKE-----PIVEVRTEEERTP 805

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG15312NP_001245603.1 Ig 39..90 CDD:472250 17/83 (20%)
Ig strand B 43..47 CDD:409358 1/3 (33%)
Ig strand C 52..56 CDD:409358 2/32 (6%)
Ig strand F 84..89 CDD:409358 2/4 (50%)
Ncam1XP_006243048.1 IgI_1_NCAM-1 20..116 CDD:409451
Ig strand A 20..25 CDD:409451
Ig strand A' 28..32 CDD:409451
Ig strand B 34..44 CDD:409451
Ig strand C 50..56 CDD:409451
Ig strand C' 59..61 CDD:409451
Ig strand D 69..75 CDD:409451
Ig strand E 77..85 CDD:409451
Ig strand F 92..100 CDD:409451
Ig strand G 104..115 CDD:409451
IG_like 124..190 CDD:214653
Ig strand B 135..139 CDD:409353
Ig strand C 148..152 CDD:409353
Ig strand E 172..176 CDD:409353
Ig strand F 186..191 CDD:409353
IgI_3_NCAM-1 211..308 CDD:143207
Ig strand A 211..216 CDD:143207
Ig strand A' 220..226 CDD:143207
Ig strand B 229..239 CDD:143207
Ig strand C 243..249 CDD:143207
Ig strand C' 251..253 CDD:143207
Ig strand D 263..266 CDD:143207
Ig strand E 271..277 CDD:143207
Ig strand F 283..292 CDD:143207
Ig strand G 295..307 CDD:143207
IgI_NCAM-1 307..413 CDD:143277 21/103 (20%)
Ig strand A 307..312 CDD:143277
Ig strand A' 316..320 CDD:143277 1/3 (33%)
Ig strand B 325..333 CDD:143277 2/7 (29%)
Ig strand C 339..345 CDD:143277 2/5 (40%)
Ig strand C' 348..351 CDD:143277 0/2 (0%)
Ig strand D 369..375 CDD:143277 1/5 (20%)
Ig strand E 378..384 CDD:143277 2/12 (17%)
Ig strand F 392..400 CDD:143277 4/7 (57%)
Ig strand G 403..413 CDD:143277 0/9 (0%)
IG_like 422..500 CDD:214653 9/83 (11%)
Ig strand B 433..437 CDD:409353 0/3 (0%)
Ig strand C 446..450 CDD:409353 1/3 (33%)
Ig strand E 473..477 CDD:409353 0/3 (0%)
Ig strand F 487..492 CDD:409353 0/4 (0%)
FN3 509..606 CDD:238020 25/120 (21%)
fn3 618..700 CDD:394996 10/81 (12%)
Herpes_BLLF1 <841..1132 CDD:282904
Blue background indicates that the domain is not in the aligned region.

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