DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cht6 and chia.2

DIOPT Version :9

Sequence 1:NP_001245598.1 Gene:Cht6 / 31935 FlyBaseID:FBgn0263132 Length:4611 Species:Drosophila melanogaster
Sequence 2:NP_998414.1 Gene:chia.2 / 406338 ZFINID:ZDB-GENE-040426-2014 Length:470 Species:Danio rerio


Alignment Length:551 Identity:188/551 - (34%)
Similarity:278/551 - (50%) Gaps:99/551 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LLCALAYCINEASSEGRVVCYYTNWSVYRPGTAKFNPQNINPYLCTHLVYAFGGFTKDNQMKPFD 79
            :||.||:.:       .:.||:||||.||||..|:.|.|::|:|||||.|||......|::   .
Zfish    13 VLCHLAFSM-------EMGCYFTNWSQYRPGIGKYTPANVDPFLCTHLFYAFAMINHANEL---I 67

  Fly    80 KYQDIEQGGYAKFTGLKTYNKQLKTMIAIGGWNEASSRFSPLVASNERRQQFIKNILKFLRQNHF 144
            .|:..::..|..|..||..|..|:|::|:||||..|::||.:|:|...||.||::.:||||...|
Zfish    68 TYEWNDETLYKAFNELKNTNPHLRTLLAVGGWNFGSTQFSIMVSSAANRQTFIQSSIKFLRTYGF 132

  Fly   145 DGIDLDWEYPAHREGGKSRDRDNYAQFVQELRAEFEREAEKTGRTRLLLTMAVPAGIEYIDKGYD 209
            ||:|||||||..| |....|:..:....:||...:|.|.:.|||.||:|:.||.||...||.||:
Zfish   133 DGMDLDWEYPGSR-GSPPEDKQRFTLLCKELLEAYEAEGKATGRRRLMLSAAVSAGKGTIDDGYE 196

  Fly   210 VPKLNKYLDWFNVLTYDFHSSHEPSVNHHAPLYSLEEDSEYNYDAEL---NIDYSIKYYLKAGAD 271
            :.::.||||:.|::|||||.:.|....|::|||...:|     :.:|   |.||:::|:...|..
Zfish   197 IAEIAKYLDFINIMTYDFHGTWERFTGHNSPLYQGSKD-----EGDLVYFNTDYAMRYWRDNGTP 256

  Fly   272 RDKLVLGIPTYGRSYTLINEESTELGAPAEGPGEQGDATREKGYLAYYEICQTLKDDPEWTVVQP 336
            .:||.:|..||||::.|.:.: |.:||||.||...|..|||.|:.:|||||..|    |.|.||.
Zfish   257 VEKLRMGFATYGRTFRLTSSD-TSVGAPASGPASAGTYTREAGFWSYYEICGFL----EGTTVQW 316

  Fly   337 NANVMGPYAYRRNQWVGYDDEAIVRKKAEYVVAQGLGGIMFWAIDNDDFRGT-CNGKPYPLIEAA 400
            ..:...|||.:.::|||:|.:.....|..|:..:..||...||:|.|||.|. |....:||:...
Zfish   317 IDDQKVPYATKNSEWVGFDTKESYETKVRYLKDKKFGGAFVWALDLDDFAGQFCGQGNHPLMGHL 381

  Fly   401 KEAMVEALGLGINEVAKPSGPQKPSRSRSRDNASNRNRLNGKTEAPLSSRRPSATRRPAVSSTQA 465
            :..:         ::..|..|                              |..|.:|..|:|: 
Zfish   382 RNLL---------DIELPPLP------------------------------PPTTAKPGQSTTR- 406

  Fly   466 PPPSTTFKLTEAEGSSLYIGGRASTTPPPPTTPDPGSDFKC--EEEGFFQHPRDCKKYYWCLDSG 528
              |:||                 :||    ||..||..| |  :.:|.:.|| |..|||.|    
Zfish   407 --PTTT-----------------TTT----TTHAPGPGF-CNGKPDGLYAHP-DPNKYYSC---- 442

  Fly   529 PSGLGIVAHMFTCPSGLYFNPAADSCDFARN 559
               .|...::..|.:|..|:.:...|.:.::
Zfish   443 ---AGGQTYVDNCGAGTEFDESCKCCGWPKH 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht6NP_001245598.1 Glyco_18 31..383 CDD:214753 146/354 (41%)
GH18_chitolectin_chitotriosidase 32..404 CDD:119351 153/375 (41%)
CBM_14 506..562 CDD:279884 14/56 (25%)
Oxidored_q2 <2691..2750 CDD:294335
CBM_14 4554..4609 CDD:279884
chia.2NP_998414.1 GH18_chitolectin_chitotriosidase 23..385 CDD:119351 153/375 (41%)
Glyco_18 24..363 CDD:214753 146/352 (41%)
CBM_14 423..468 CDD:279884 14/52 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1289629at2759
OrthoFinder 1 1.000 - - FOG0000107
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11177
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.020

Return to query results.
Submit another query.