DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht6 and chia.4

DIOPT Version :9

Sequence 1:NP_001245598.1 Gene:Cht6 / 31935 FlyBaseID:FBgn0263132 Length:4611 Species:Drosophila melanogaster
Sequence 2:NP_956740.1 Gene:chia.4 / 337333 ZFINID:ZDB-GENE-030131-9279 Length:475 Species:Danio rerio


Alignment Length:552 Identity:178/552 - (32%)
Similarity:264/552 - (47%) Gaps:85/552 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LFLLCALAYCINEASSEGRVVCYYTNWSVYRPGTAKFNPQNINPYLCTHLVYAFGGFTKDNQMKP 77
            |..|..::..:.:.....::.||:.|||.|||...|:.|.|::|:|||||:|||......|::..
Zfish     4 LIFLAGISLALCQCGLASQLACYFANWSQYRPDVGKYMPSNVDPHLCTHLIYAFSVINIKNKLAT 68

  Fly    78 FDKYQDIEQGGYAKFTGLKTYNKQLKTMIAIGGWNEASSRFSPLVASNERRQQFIKNILKFLRQN 142
             .::.|  :..|..|..||..|..|||::|:|..|..|::||.:|::.::||.||::.:||||.:
Zfish    69 -SEWND--ETLYQSFNALKQSNPNLKTLLAVGTLNLGSTQFSRMVSTPQKRQTFIESSIKFLRTH 130

  Fly   143 HFDGIDLDWEYPAHREGGKSRDRDNYAQFVQELRAEFEREAEKTGRTRLLLTMAVPAGIEYIDKG 207
            .|||:|||||||...| ....|:..:....:||...::.|::.|.|.||:||.||.|....||.|
Zfish   131 GFDGLDLDWEYPGSGE-SPPEDKHRFTLLCKELLKAYQAESKATRRPRLMLTAAVAARKGIIDAG 194

  Fly   208 YDVPKLNKYLDWFNVLTYDFHSSHEPSVNHHAPLY--SLEEDSEYNYDAELNIDYSIKYYLKAGA 270
            |::.:::||||:.|::|||||.|.|....|::|||  |.:...:..|    |.|:::.|:...||
Zfish   195 YEIAEVSKYLDFINIMTYDFHGSWENVTGHNSPLYRDSRDTGDQIYY----NTDFAMTYWRDQGA 255

  Fly   271 DRDKLVLGIPTYGRSYTLINEESTELGAPAEGPGEQGDATREKGYLAYYEICQTLKDDPEWTVVQ 335
            ..:||.:|...|||::.| :.....||||..||...|..|||.||.:|||||..|    :...|:
Zfish   256 PVEKLRMGFAAYGRTFCL-SSAVNGLGAPVSGPASAGTYTREAGYWSYYEICTFL----QRASVE 315

  Fly   336 PNANVMGPYAYRRNQWVGYDDEAIVRKKAEYVVAQGLGGIMFWAIDNDDFRGT-CNGKPYPLIEA 399
            ..|:...|||.....|||:||:.....|.:|:..:|.||...|::|.|||.|. |....||||..
Zfish   316 QIADQKVPYATEGLNWVGFDDQKSYETKVDYLKEKGFGGAFVWSLDLDDFSGQFCGQGKYPLIGH 380

  Fly   400 AKEAMVEALGLGINEVAKPSGPQKPSRSRSRDNASNRNRLNGKTEAPLSSRRPSATRRPAVSSTQ 464
            ....:                           |.||       ||   ....|...:....|:| 
Zfish   381 LHTLL---------------------------NISN-------TE---FRHLPKTIKSGGASAT- 407

  Fly   465 APPPSTTFKLTEAEGSSLYIGGRASTTPPPPTTPDPGSDFKCEE--EGFFQHPRDCKKYYWCLDS 527
                                 |...||.|...|...|||| |..  .|.|.:|.:...:..|   
Zfish   408 ---------------------GNIVTTTPIVKTVTSGSDF-CAGGLVGIFANPDNPMTFIQC--- 447

  Fly   528 GPSGLGIVAHMFTCPSGLYFNPAADSCDFARN 559
             .:|...:.:   ||:...|:|....|::.:|
Zfish   448 -ANGRTFIQN---CPAKTVFDPDCSCCNWPKN 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht6NP_001245598.1 Glyco_18 31..383 CDD:214753 138/353 (39%)
GH18_chitolectin_chitotriosidase 32..404 CDD:119351 147/374 (39%)
CBM_14 506..562 CDD:279884 12/56 (21%)
Oxidored_q2 <2691..2750 CDD:294335
CBM_14 4554..4609 CDD:279884
chia.4NP_956740.1 Glyco_18 22..363 CDD:214753 138/353 (39%)
GH18_chitolectin_chitotriosidase 25..381 CDD:119351 147/368 (40%)
ChtBD2 425..473 CDD:214696 13/55 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D264489at33208
OrthoFinder 1 1.000 - - FOG0000107
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11177
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.020

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