DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht6 and Chit1

DIOPT Version :9

Sequence 1:NP_001245598.1 Gene:Cht6 / 31935 FlyBaseID:FBgn0263132 Length:4611 Species:Drosophila melanogaster
Sequence 2:NP_001073157.1 Gene:Chit1 / 289032 RGDID:1305646 Length:464 Species:Rattus norvegicus


Alignment Length:551 Identity:190/551 - (34%)
Similarity:283/551 - (51%) Gaps:102/551 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 QTLFLLCALAYCINEASSEGRVVCYYTNWSVYRPGTAKFNPQNINPYLCTHLVYAFGGFTKD--N 73
            |:|.|.......:.:..|..::.||:|||:.||.|.|:|.|::::|.||||::|||.|....  :
  Rat     3 QSLALAGVTTLLMIQWGSAAKLFCYFTNWAQYRSGAARFLPRDVDPNLCTHVIYAFAGLNNHQVS 67

  Fly    74 QMKPFDK--YQDIEQGGYAKFTGLKTYNKQLKTMIAIGGWNEASSRFSPLVASNERRQQFIKNIL 136
            .::|.|:  ||::        ..||..|.:|||::|:|||:..:.:|:.:||:...||.|:.:.|
  Rat    68 TVEPNDELFYQEL--------NSLKKRNPKLKTLLAVGGWSFGTQKFTDMVATASTRQTFVNSAL 124

  Fly   137 KFLRQNHFDGIDLDWEYPAHREGGKSRDRDNYAQFVQELRAEFEREAEKTGRTRLLLTMAVPAGI 201
            .|||.:.|||:|||||||..| |..:.|::.:...:|:|...|:.||..:|::|||||.|||.|.
  Rat   125 SFLRTHGFDGLDLDWEYPGSR-GSPAVDKERFTALIQDLAKAFQEEARASGKSRLLLTAAVPTGR 188

  Fly   202 EYIDKGYDVPKLNKYLDWFNVLTYDFHSSHEPSVNHHAPLYSLEEDSEYNYDAELNIDYSIKYYL 266
            .::|.||:|.|:.:.||:.|::.||||||.:.:..|::|||  :...|...|||.|:|.::..:|
  Rat   189 GHVDAGYEVDKIVQSLDFINLMAYDFHSSWDKTTGHNSPLY--KRQGETGKDAEKNVDAAVTLWL 251

  Fly   267 KAGADRDKLVLGIPTYGRSYTLINEESTELGAPAEGPGEQGDATREKGYLAYYEICQTLKDDPEW 331
            :.|....||:||:|.||||:||.:...:.:||||.|||..|..|:|||.|.|:|:|       .|
  Rat   252 QKGTPASKLMLGMPAYGRSFTLASSSDSGVGAPATGPGAPGPYTKEKGILVYFEVC-------SW 309

  Fly   332 TVVQPNANVMGPYAYRRNQWVGYDDEAIVRKKAEYVVAQGLGGIMFWAIDNDDFRGT-CNGKPYP 395
            ...|...:...||..:.|||||:||....|.||.||..:||||.|.|.:|.|||:|: ||...||
  Rat   310 KGKQRIEDQKVPYVSQGNQWVGFDDRESFRAKAAYVKQKGLGGAMVWILDGDDFKGSFCNEGQYP 374

  Fly   396 LIEAAKEAMVEALGLGINEVAKPSGPQKPSRSRSRDNASNRNRLNGKTEAPLSSRRPSATRRPAV 460
            ||....:           |::..|||.:                :.:.|.| ...:||       
  Rat   375 LIRTLHQ-----------ELSLSSGPPR----------------SPEQEVP-GPHQPS------- 404

  Fly   461 SSTQAPPPSTTFKLTEAEGSSLYIGGRASTTPPPPTTPDPGSDFKCE--EEGFFQHPRDCKKYYW 523
                                            .|...|.||.|..|:  .:|.:.:|.:...:|.
  Rat   405 --------------------------------EPEQGPSPGLDDFCQGKADGLYPNPTEKSSFYS 437

  Fly   524 CLDSGPSGLGIVAHMFTCPSGLYFNPAADSC 554
            |     .|..:..|  :||.||.|   .|||
  Rat   438 C-----GGGRLFQH--SCPPGLVF---IDSC 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht6NP_001245598.1 Glyco_18 31..383 CDD:214753 148/355 (42%)
GH18_chitolectin_chitotriosidase 32..404 CDD:119351 158/376 (42%)
CBM_14 506..562 CDD:279884 15/51 (29%)
Oxidored_q2 <2691..2750 CDD:294335
CBM_14 4554..4609 CDD:279884
Chit1NP_001073157.1 GH18_chitolectin_chitotriosidase 24..383 CDD:119351 158/387 (41%)
ChtBD2 416..463 CDD:214696 15/53 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1289629at2759
OrthoFinder 1 1.000 - - FOG0000107
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11177
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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