DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2990 and Setx

DIOPT Version :9

Sequence 1:NP_727386.1 Gene:CG2990 / 31934 FlyBaseID:FBgn0030170 Length:1100 Species:Drosophila melanogaster
Sequence 2:XP_006233948.1 Gene:Setx / 362096 RGDID:1565575 Length:2702 Species:Rattus norvegicus


Alignment Length:902 Identity:189/902 - (20%)
Similarity:293/902 - (32%) Gaps:360/902 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   406 CGNCAYNTICSSFAQKDSSLQLSDSHPLKKLMPQLLEHLS--------EADHAYVQHWCGLLALE 462
            ||  |..::|.|.           |.|:........|:.:        .|.....|.|   |...
  Rat  1701 CG--APTSLCQSI-----------SRPVPVRFQDCAEYFNVFLPLIILNAFETVAQEW---LNSP 1749

  Fly   463 EQHNRQSSHVRSFWTKDPAEREKEGIAIRHLKLVKGQEVILEEGRYRQTLELGEEADPSRDLSLS 527
            .:.|....|:|.|    ||:.:|                      |.:.|...||::.::.|...
  Rat  1750 NKENFYQLHLRKF----PADYKK----------------------YWEFLIYLEESELAKQLHPK 1788

  Fly   528 GFDLGEYVVISSTSRLAVAAGFIVSIEARRLDLRLERDLSQRY-----------------SEETF 575
            ..||                .|:|. |.:.:|....:|.|..|                 :|.:.
  Rat  1789 ENDL----------------VFLVP-EKKYMDRHSVQDRSHYYCGYVHKFRRTSVMRSGKTECSL 1836

  Fly   576 IIDKHDSQSFATFNFTNL--------------GMLLSEGERFQELRDIIVAKKPPEQHKVLPKII 626
            .|...|:...:....|..              .|.|..| |.|..|.::    .|.......|.:
  Rat  1837 CIQTQDNMPASVKELTKCIVISSLVTTQRKLKAMSLLSG-RNQLARAVL----NPNPMDFCTKDL 1896

  Fly   627 LTKGA----PILLNLNKVQQNAALRALTTSSH-------LLIKGLPGTGKTQTLVALVRLLHLLG 680
            ||..:    ..|.:.|:.|:.|...|.....|       .||.|.|||||::|:|.|  |..||.
  Rat  1897 LTTTSERIIAYLKDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGL--LYRLLT 1959

  Fly   681 KS------------------VLITAQTHSAVDNLIMRLL------------PFG----LPMMRLG 711
            :|                  ||:.|.:::|||.|:.:::            |.|    :.::|||
  Rat  1960 ESQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLG 2024

  Fly   712 SGSRI--------------HK---------------------QLEEISEERLTKDCKTVEELEK- 740
            ....|              |:                     ||:|:|.:|..  |:...|::: 
  Rat  2025 PEKSINTEVLKFSLDSQVSHRMKKDLPSHIQEMLRRKEILDAQLDELSRQRAL--CRGGREMQRQ 2087

  Fly   741 ----------------------ALGQPS-----------IVGVTCLGCGHPLFQ---RRQ----F 765
                                  ..|:|.           ::..|....|..|.:   |.|    |
  Rat  2088 ELDEHIVIVSKERQELASKIKEVQGRPQRAQNTIILESHVICCTLSTSGGLLLESAFRGQGGVPF 2152

  Fly   766 DYCIVDEATQVLQPTVLRPLIH-CSKFVLVGDPEQLPPIVRSKEARQRGADETLF---------- 819
            ...|||||.|..:...|.|||| |:|.||||||:||||.|.|.:|::.|.|:::.          
  Rat  2153 SCVIVDEAGQSCEVETLSPLIHRCNKLVLVGDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEEN 2217

  Fly   820 --QRLDSEKATAVLSLQYRMNKTITRLANELTYGGDLKCASDEVSGARFEVELLNEAPRWVQRAL 882
              |.:........|::||||:..|....:...|..:||                           
  Rat  2218 VEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLK--------------------------- 2255

  Fly   883 TTHLEQAVTLINTGDCLERC-QEFVYASQRLVDTCSSIEQSFSEDKDEIRKLTSKKRVSKYTNYC 946
            |..|.:.:          || .|:.:....:.|.....||   .|.|            .|.|..
  Rat  2256 TNRLTETI----------RCSSEWPFQPYLVFDVGDGSEQ---RDND------------SYINVQ 2295

  Fly   947 EAGIVMHLLRYLLKSGYEAS--RIGVIAPYRAQVELFKK-------------------------- 983
            |..:||.:::.:.:...:.|  .||:|..|:||..:.:|                          
  Rat  2296 EIKLVMEIIKLIKEKRKDISFRNIGIITHYKAQKTMIQKDLEKEFDKKGLLQPIMMGESRQQDSE 2360

  Fly   984 -------------LASKLDTD-------------------LECNTVDQFQGRDKNLIIYSCSKTG 1016
                         .:.:||:.                   .|.:|||.||||.|:.||.:|.:. 
  Rat  2361 ASKQQQKSSECMHASDELDSSTVTQSGISSLENGATHTGPAEVDTVDAFQGRQKDCIIVTCVRA- 2424

  Fly  1017 GDFSDMERSREAEILEDQRRLTVAITRAKNKLILLGDIKCLEQYGPFRQLFKHIPDR 1073
               |.::.|  ...|...:||.|.|||||..|.:||.::.|.:...:.:|.:....|
  Rat  2425 ---SAVQGS--IGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQDAQKR 2476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2990NP_727386.1 Dna2 99..297 CDD:285859
Cas4_I-A_I-B_I-C_I-D_II-B <283..415 CDD:294426 3/8 (38%)
TIGR00376 480..1069 CDD:273041 172/814 (21%)
P-loop_NTPase 636..859 CDD:304359 87/352 (25%)
AAA_12 815..1055 CDD:289832 62/312 (20%)
SetxXP_006233948.1 SEN1_N 37..>356 CDD:289496
AAA_11 1910..2195 CDD:289831 73/288 (25%)
AAA_19 1934..>1997 CDD:289986 22/64 (34%)
AAA_12 2202..2456 CDD:289832 61/311 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335124
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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