DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2990 and Upf1

DIOPT Version :9

Sequence 1:NP_727386.1 Gene:CG2990 / 31934 FlyBaseID:FBgn0030170 Length:1100 Species:Drosophila melanogaster
Sequence 2:NP_001285145.1 Gene:Upf1 / 32153 FlyBaseID:FBgn0030354 Length:1180 Species:Drosophila melanogaster


Alignment Length:844 Identity:204/844 - (24%)
Similarity:349/844 - (41%) Gaps:237/844 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   352 LLREVASGRNEQRDL---------LMLRNDLAYWLTREVA---------IPASKEDPLEQLPLPE 398
            |.|:..:.:|..:|:         |:.......||.::.:         |.|::.:.||:|    
  Fly   185 LCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQINKLEEL---- 245

  Fly   399 PVYHHSACGNCAYNTICSSFAQKDSSLQLSDSHPLKKLMPQLLEHLSEADHAYVQHWCGLLALEE 463
                       ....|.::|  :|......||.|...|:..      |..:.|.:.:..|:.||.
  Fly   246 -----------WKENIEATF--QDLEKPGIDSEPAHVLLRY------EDGYQYEKTFGPLVRLEA 291

  Fly   464 QHNRQSSHVRSFWTKDPAERE-----------KEGIAI-------RHLKLVKGQEVILEEGRYRQ 510
            :::::        .|:.|.:|           |:.||.       ..:||:.|.|:.|.      
  Fly   292 EYDQK--------LKESATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLH------ 342

  Fly   511 TLELGEEADPSRDL-------SLSGFDLGEYVVISSTSRLAVAAGFIVSI--EARRLDLRLERDL 566
              .:||..:|..::       ...|.|:|..:..|:.:.:...:.|.|..  :....| |:.|.|
  Fly   343 --YVGELYNPWSEIGHVIKVPDNFGDDVGLELKSSTNAPVKCTSNFTVDFIWKCTSFD-RMTRAL 404

  Fly   567 SQRYSEETFIIDKHDSQSFATFNFTNLGMLLSEGERFQELRDIIVAKKPPEQHKVLPKIILTKGA 631
            .:      |.||::...:|.      ...||..|.  .:..|.::.:.|.      ||:.   .|
  Fly   405 CK------FAIDRNSVSNFI------YSRLLGHGR--ADSNDEVLFRGPQ------PKLF---SA 446

  Fly   632 PILLNLNKVQQNAALRALTTSSHLLIKGLPGTGKTQTLVALV-RLLHLLGKSVLITAQTHSAVDN 695
            |.|.:||:.|..|...||..... ||:|.||||||.|...:| :|:.|.|.:||:.|.:::|||.
  Fly   447 PHLPDLNRSQVYAVKHALQRPLS-LIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVDQ 510

  Fly   696 LIMRLLPFGLPMMRLGSGSR-----------IH------------KQLEEISEER---LTKDCKT 734
            |..::....|.::|:.:.||           :|            |:|:::.:|.   .:.|.|.
  Fly   511 LTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSELKKLQQLKDETGELSSADEKR 575

  Fly   735 VEELEKA-----LGQPSIVGVTCLGCGHPLFQRRQFDYCIVDEATQVLQPTVLRPLIHCSK-FVL 793
            ...|::|     |....::..||:|.|.....|.:|...::||:.|..:|..:.|::..:| .:|
  Fly   576 YRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLIL 640

  Fly   794 VGDPEQLPPIVRSKEARQRGADETLFQRLDSEKATAVLSL-------QYRMNKTITRLANELTYG 851
            |||..||.|:|..|:|.:.|..::||:||      .||.:       ||||:..:::..:...|.
  Fly   641 VGDHCQLGPVVMCKKAARAGLSQSLFERL------VVLGIRPFRLEVQYRMHPELSQFPSNFFYE 699

  Fly   852 GDLK---CASDEVSGARFEVELLNEAPRWVQRALTTHLEQAVTLINTGDCLERCQEFVYASQRLV 913
            |.|:   ||.|.    |.:::.     .|.|.                   ||...|:       
  Fly   700 GSLQNGVCAEDR----RLKLDF-----PWPQP-------------------ERPMFFL------- 729

  Fly   914 DTCSSIEQSFSEDKDEIRKLTSKKRVSKYTNYCEAGIVMHLLRYLLKSGYEASRIGVIAPYRAQ- 977
                     .::.::||     ....:.:.|..||..|..:....||:|.:..:||:|.||..| 
  Fly   730 ---------VTQGQEEI-----AGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQR 780

  Fly   978 ------VELFKKLASKLDTDLECNTVDQFQGRDKNLIIYSCSKTGGDFSDMERSREAE---ILED 1033
                  ::....|.|:|..::|..:||.||||:|::||.||          .||.|.:   .|.|
  Fly   781 AYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSC----------VRSNERQGIGFLND 835

  Fly  1034 QRRLTVAITRAKNKLILLGDIKCLEQYGPFRQLFKHIPD--RCRLKLEEGRMEFGWQRIQEDLV 1095
            .|||.||:||||..:|::|:.|.|.:    :||:.|:.:  :.|..|.||.:    ..::|.|:
  Fly   836 PRRLNVALTRAKFGIIIVGNPKVLAK----QQLWNHLLNFYKDRKVLVEGSL----NNLKESLI 891

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2990NP_727386.1 Dna2 99..297 CDD:285859
Cas4_I-A_I-B_I-C_I-D_II-B <283..415 CDD:294426 12/80 (15%)
TIGR00376 480..1069 CDD:273041 172/668 (26%)
P-loop_NTPase 636..859 CDD:304359 78/265 (29%)
AAA_12 815..1055 CDD:289832 68/259 (26%)
Upf1NP_001285145.1 UPF1_Zn_bind 98..249 CDD:286500 12/78 (15%)
DNA2 122..897 CDD:224037 204/844 (24%)
Mis12 210..299 CDD:283509 19/119 (16%)
AAA_19 458..>515 CDD:289986 24/57 (42%)
AAA_12 661..857 CDD:289832 68/260 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438984
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10887
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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