DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2990 and setx

DIOPT Version :9

Sequence 1:NP_727386.1 Gene:CG2990 / 31934 FlyBaseID:FBgn0030170 Length:1100 Species:Drosophila melanogaster
Sequence 2:XP_002936221.1 Gene:setx / 100145435 XenbaseID:XB-GENE-966858 Length:2535 Species:Xenopus tropicalis


Alignment Length:1016 Identity:238/1016 - (23%)
Similarity:372/1016 - (36%) Gaps:332/1016 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 DHLMKFIDPIVSFVAQYVK-GEPPSVLLPEVYR-------GQIHEICDIEENLWVPQLGLKGKVD 292
            ||..|.:.|..:....:.| |.||||..|...:       .:...:....||...|| |:     
 Frog  1472 DHCPKHMPPEKADDHLFAKPGLPPSVSKPSTTKVFASSNTSRTASLTKDLENFPRPQ-GI----- 1530

  Fly   293 VSVKVKNQRQREEI--IPLELKTGRASFSMEHKGQLLLYQLMHSAQGRDTQSGLLLYLKEGLLRE 355
              :|.|.|..:..:  :|..|.....:.......|.|:.|  .:...:.:.|.:   .:.|.||.
 Frog  1531 --LKAKPQSAKAPVPKLPKPLTVQNRASDTNSVLQPLINQ--SNVPSKPSYSAV---SEAGKLRP 1588

  Fly   356 VASGRN-EQRDLLMLRNDLAYWLTREVAIPASKEDP---LEQLPLPE-PV-------YHHSACGN 408
            .|:.:. :|||...|..:|..| ..|:....|:..|   |.||||.: |:       |.:.....
 Frog  1589 YAAQKPLQQRDQGWLMRELLQW-KFEMFDNVSRFGPPSNLCQLPLLKVPIKFSSYEEYFNVFFPL 1652

  Fly   409 CAYNTICSSFAQKDSSLQLSDSHPLKKLMPQLLEHLSEADHAYVQHWC--GLLALEEQHNRQSSH 471
            ...||. .|.||:.|..|.:....|.||              ::|::|  ||:      ||....
 Frog  1653 MLLNTF-ESLAQEWSVKQKAIHTDLCKL--------------HLQNFCPDGLV------NRGEFQ 1696

  Fly   472 VRSFWTKDPAEREKEGIAIRHLKLVKGQEVILEEGRYRQTLELGEEAD------PSRDLSLSGFD 530
            |   |.:|     .:....||.|                      |.|      |....||||.:
 Frog  1697 V---WFRD-----ADLCMQRHPK----------------------EDDLVFLCMPESTPSLSGEE 1731

  Fly   531 LGEYVVISSTSRLAVAAGFIVSIEARRLDLRLERDLSQRYSEETFI-IDKHDSQSFATFNFTN-- 592
            :     :|..:|: ...|::....      |..|..||...:.|.. :..|...:.:.|....  
 Frog  1732 M-----VSHGARV-YHTGYVSRFN------RSHRTQSQEKEQYTLCDLCIHTQGNLSAFRNQQVR 1784

  Fly   593 ---LGMLLSEGERFQELRDIIVAKKPPEQHKVLPKIILTKGA---------------PILLNLNK 639
               :|.|::...:|:.|..:       :::.:...|||...|               |.|...|.
 Frog  1785 CAVIGSLITTQRQFRALLQL-------QRNPLFRPIILPNPADFIPRDNAASESSSFPSLKEYNS 1842

  Fly   640 VQQNAALRALT-TSSH------LLIKGLPGTGKTQTLVALV-RLLHLLGKS-------------- 682
            .|:.|..:|.: ...|      .||.|.|||||::|:|.|: |:|...|.|              
 Frog  1843 DQRYAIEKAYSMVKQHPRLPRICLIHGPPGTGKSKTIVGLLYRILMENGSSTVPVQNLSAKNKRN 1907

  Fly   683 -VLITAQTHSAVDNLIMRLL------------PFG----LPMMRLGS------------------ 712
             ||:.|.:::|:|:|:.:::            |.|    :.::|||:                  
 Frog  1908 RVLVCAPSNAALDDLMKKIILEFKEKCHNKNTPLGNCGDINLVRLGAEKTISSDVVKFSLDCQVN 1972

  Fly   713 --------GSRIHK-------QLEEISEERLTKDC------------------------------ 732
                    ...:||       :|:|:|..|..:.|                              
 Frog  1973 HRITRAQQDQELHKRKELLDRRLDELSRRRALEKCNKNTCAPLDEEIARLSKERQLLADSLKLVR 2037

  Fly   733 KTVEELEKALGQPS-IVGVTCLGCGHPLFQ-------RRQFDYCIVDEATQVLQPTVLRPLIH-C 788
            :..:||::.:...| ::..|....|..|.:       :..|...|||||.|..:...|.||:| |
 Frog  2038 RRPQELQRTIILESHVICCTLSTSGGILLESAFRQLGQEPFSCVIVDEAGQSCEVENLIPLLHRC 2102

  Fly   789 SKFVLVGDPEQLPPIVRSKEARQRGADETLFQR----LDS---EKATAVLSLQYRMNKTITRLAN 846
            ||.|||||||||||.|.|.:|.:.|..::|..|    |||   :.....|::||||:..|....:
 Frog  2103 SKLVLVGDPEQLPPTVISMKAEELGYGQSLMSRMCSFLDSTGTKSPVLHLTVQYRMHPDICLFPS 2167

  Fly   847 ELTYGGDLKC--ASDEVSGARFEVELLNEAPRWVQRALTTHLEQAVTLINTGDCLERC-QEFVYA 908
            ...|...||.  |::||                                       || .::.:.
 Frog  2168 HYFYKRMLKTDRATEEV---------------------------------------RCSSDWPFQ 2193

  Fly   909 SQRLVDTCSSIEQSFSEDKDEIRKLTSKKRVSKYTNYCEAGIVMHLLRYLLKSGYEA---SRIGV 970
            ...:.|.....||              |:|.| :.|..|..:.:.|:: |:||..:.   ..|||
 Frog  2194 PYMVFDVADGFEQ--------------KERES-FCNPQEIKVAVALIK-LIKSRKKEFCFRNIGV 2242

  Fly   971 IAPYRAQ-VELFKKLASKLDTDL---ECNTVDQFQGRDKNLIIYSC----SKTGGDFSDMERSRE 1027
            |.||||| :.:.::|......|:   |.:|||.||||.|:.||.:|    |..||          
 Frog  2243 ITPYRAQKMRIIEELRRAFGNDIRPGEVDTVDGFQGRQKDCIIVTCVRANSTQGG---------- 2297

  Fly  1028 AEILEDQRRLTVAITRAKNKLILLGDIKCLEQYGPFRQLFK 1068
            ...|..::||.|.|||||..|.:||.::.|.:...:..|.:
 Frog  2298 IGFLASRQRLNVTITRAKFSLFILGSLRTLMENKDWNHLIQ 2338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2990NP_727386.1 Dna2 99..297 CDD:285859 16/68 (24%)
Cas4_I-A_I-B_I-C_I-D_II-B <283..415 CDD:294426 34/145 (23%)
TIGR00376 480..1069 CDD:273041 174/748 (23%)
P-loop_NTPase 636..859 CDD:304359 88/342 (26%)
AAA_12 815..1055 CDD:289832 69/260 (27%)
setxXP_002936221.1 DEXXQc_SETX 1840..2157 CDD:350800 80/316 (25%)
AAA_12 2128..2323 CDD:404073 68/259 (26%)
PHA03247 <2365..2534 CDD:223021
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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