DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1889 and Tnxb

DIOPT Version :10

Sequence 1:NP_727376.2 Gene:CG1889 / 31928 FlyBaseID:FBgn0030164 Length:338 Species:Drosophila melanogaster
Sequence 2:NP_001415265.1 Gene:Tnxb / 81877 MGIID:1932137 Length:4361 Species:Mus musculus


Alignment Length:286 Identity:94/286 - (32%)
Similarity:139/286 - (48%) Gaps:41/286 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 GSLQEQLVDLRRAGSAPVVGLASPNALASRFPFSHNSLDIE--------PQLLAN--GGAAAVPI 123
            |.:||.|:.   ||:       :.:.|...||.:..|..:.        |.:|.:  .|...:|.
Mouse  4089 GQIQEILLP---AGT-------TSHRLLRLFPSTFYSAQLRAIWGESLTPPVLTSFTTGGLRIPF 4143

  Fly   124 TPANCLKQ-QHG-----VVRIRPRSNVE-PFFVFCDQKVRNGGWTMVVNRYDGSEDFNRKWADYK 181
             |.:|.:: ::|     ...|....|.| |..||||.:...|||.:...|.||..||.|.|.:|.
Mouse  4144 -PRDCGEELKNGPSASKTTTIFLNGNRERPLDVFCDMETDGGGWLVFQRRMDGQTDFWRDWEEYA 4207

  Fly   182 IGFGPLTTEFFIGLDKLHQITSSDNYELLVQLQNRKQELRYALYDHFSIGSESEQYRLNVLGDYH 246
            .|||.::.||::|.:.||.:|.:.:|.|.|.|:..|:.: :|.||.|.:.|..|.|||::.| ||
Mouse  4208 HGFGNISGEFWLGNEALHSLTQAGDYSLRVDLRAGKEAV-FAQYDFFRVDSAKENYRLHLEG-YH 4270

  Fly   247 GDAADALRDHTGKKFSTHDRVNDENEQ--NCAAQQSGAFWYGGSCNLTNPFGLYQRLLERDVDGF 309
            |.|.|::..|:|..||..||  |.|..  :||....||:|| .:|:..|..|||...:  |..|.
Mouse  4271 GTAGDSMSYHSGSVFSARDR--DPNNLLISCAVSYRGAWWY-RNCHYANLNGLYGSTV--DHQGV 4330

  Fly   310 KGILWRGFLNGPKGSLKIVRMMVRPR 335
            ....|:||    :.|:....|.:|||
Mouse  4331 SWYHWKGF----EFSVPFTEMKLRPR 4352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1889NP_727376.2 FReD 123..335 CDD:238040 78/220 (35%)
TnxbNP_001415265.1 EGF_2 177..200 CDD:400365
EGF_2 208..231 CDD:400365
EGF_Tenascin 236..262 CDD:480934
EGF_Tenascin 267..293 CDD:480934
EGF_Tenascin 298..325 CDD:480934
C_rich_MXAN6577 301..432 CDD:469225
EGF_Tenascin 422..448 CDD:480934
EGF_2 456..479 CDD:400365
EGF_Tenascin 484..510 CDD:480934
EGF_Tenascin 515..542 CDD:480934
EGF_Tenascin 546..572 CDD:480934
C_rich_MXAN6577 581..690 CDD:469225
EGF_Tenascin 706..732 CDD:480934
fn3 737..818 CDD:394996
fn3 830..906 CDD:394996
FN3 1076..1138 CDD:473895
fn3 1292..1369 CDD:394996
FN3 1386..1466 CDD:238020
fn3 1484..1557 CDD:394996
fn3 1599..1676 CDD:394996
fn3 1707..1777 CDD:394996
fn3 1801..1881 CDD:394996
fn3 1904..1971 CDD:394996
fn3 2000..2067 CDD:394996
fn3 2102..2164 CDD:394996
FN3 2211..2279 CDD:238020
fn3 2315..2395 CDD:394996
fn3 2426..2496 CDD:394996
fn3 2522..2602 CDD:394996
fn3 2636..2709 CDD:394996
fn3 2748..2825 CDD:394996
fn3 2861..2931 CDD:394996
fn3 2970..3045 CDD:394996
fn3 3076..3146 CDD:394996
fn3 3183..3260 CDD:394996
FN3 3259..3691 CDD:442628
fn3 3569..3644 CDD:394996
fn3 3679..3752 CDD:394996
fn3 3773..3855 CDD:394996
FN3 <3842..>4086 CDD:442628
FN3 3876..3955 CDD:238020
fn3 4052..4129 CDD:394996 10/49 (20%)
Fibrinogen_C 4143..4352 CDD:395095 78/220 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.