DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1889 and col11a2l

DIOPT Version :10

Sequence 1:NP_727376.2 Gene:CG1889 / 31928 FlyBaseID:FBgn0030164 Length:338 Species:Drosophila melanogaster
Sequence 2:NP_001005799.1 Gene:col11a2l / 448277 XenbaseID:XB-GENE-12564499 Length:340 Species:Xenopus tropicalis


Alignment Length:191 Identity:73/191 - (38%)
Similarity:98/191 - (51%) Gaps:5/191 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 EPFFVFCDQKVRNGGWTMVVNRYDGSEDFNRKWADYKIGFGPLTTEFFIGLDKLHQITSSDNYEL 209
            :|..|.||.....|||.:...|.|||.||.|.|..||.|||...:||::|.:.:|::|||.|::|
 Frog   152 KPIKVLCDMDTDGGGWIVFQRRVDGSVDFYRDWKSYKQGFGSQLSEFWLGNENIHRLTSSGNFQL 216

  Fly   210 LVQLQNRKQELRYALYDHFSIGSESEQYRLNVLGDYHGDAADALRDHTGKKFSTHDRVND-ENEQ 273
            ...|::......||.|..|.:..||:.|.|.......|.|.|:|..|..:.|||.|..|| .::.
 Frog   217 RFDLEDFDNNRTYATYSQFRLEPESQNYTLRFREFTGGPAGDSLFTHKDRAFSTKDADNDPASKT 281

  Fly   274 NCAAQQSGAFWYGGSCNLTNPFGLYQRLLERDVDGFKGILWRGFLNGPKGSLKIVRMMVRP 334
            |||.:..||:|| .||..:...|.|.|......||  |:.|..| .|...|||:..|.:||
 Frog   282 NCAERYKGAWWY-ESCYHSCLNGEYMRGQHDKADG--GVHWAKF-RGVNYSLKVSEMKLRP 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1889NP_727376.2 FReD 123..335 CDD:238040 73/191 (38%)
col11a2lNP_001005799.1 Collagen 48..110 CDD:460189
FReD 128..338 CDD:238040 71/189 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.