DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1889 and fga

DIOPT Version :10

Sequence 1:NP_727376.2 Gene:CG1889 / 31928 FlyBaseID:FBgn0030164 Length:338 Species:Drosophila melanogaster
Sequence 2:NP_001181918.1 Gene:fga / 378986 ZFINID:ZDB-GENE-031010-21 Length:684 Species:Danio rerio


Alignment Length:367 Identity:113/367 - (30%)
Similarity:165/367 - (44%) Gaps:84/367 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 AMACLSTTQTDLGG-GLLVPPSLGN------ASSSSCPVSALS------GLTTRMQS--LNNEIA 62
            ::..||.:.:|||| |.....:||.      :||||.....:|      ..||....  ..:::.
Zfish   356 SLTSLSHSTSDLGGFGGDFFKNLGTDNRKYASSSSSTSTKTVSDGSKSYSKTTLTSDPIFGDDLG 420

  Fly    63 SVKEQIGSLQEQLVDL----------RRAGSAPVVGLASPNALASRFPFSHNSLDIEPQLLANGG 117
            :...  |.::|.:.|:          |:||   .||              .:.::|: |...|||
Zfish   421 AFMR--GDVEEDMPDIHARSVKSQDDRKAG---FVG--------------GDCVEIQ-QKHVNGG 465

  Fly   118 AAAVPITPANCLKQQHGVVRIRPRSNVEPFFVFCDQKVRNGGWTMVVNRYDGSEDFNRKWADYKI 182
                          |.|:.:|:|..:.|...|:|||....||||:|..|.|||.:|||.|.:|..
Zfish   466 --------------QSGMFKIKPAGSEEVVEVYCDQSTGLGGWTLVQQREDGSVNFNRTWKEYLN 516

  Fly   183 GFGPLTT----EFFIGLDKLHQITSSDNYELLVQLQNRKQELRYALYDHFSIGSESEQYRLNVLG 243
            |||.:..    |.:||...||.:|..::. |.|:||:......||.| :..:|||:|.:.|.. .
Zfish   517 GFGQIDKQGKGEIWIGNKFLHLLTQKESL-LRVELQDWTGAEAYAEY-NIKVGSEAEGFPLTA-S 578

  Fly   244 DYHGDAADAL----------RDHTGKKFSTHDRVNDENEQNCAAQQSGAFWYGGSCNLTNPFGLY 298
            ||.|||.|||          ..|.|.||||.||.:|:.|:|||....|.:|| .:|...|..|:|
Zfish   579 DYDGDAGDALVRGHPNLGSFLSHAGMKFSTFDRDSDKWEENCAEMYGGGWWY-NNCQSANLNGIY 642

  Fly   299 QRLLERD------VDGFKGILWRGFLNGPKGSLKIVRMMVRP 334
            .:..:.|      .:...|::|..| .....|||:|||.:||
Zfish   643 YKGGQYDPATKVPYEIENGVVWLPF-KPADYSLKVVRMKIRP 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1889NP_727376.2 FReD 123..335 CDD:238040 84/232 (36%)
fgaNP_001181918.1 Fib_alpha 45..186 CDD:462570
FReD 453..684 CDD:238040 89/251 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.