DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1889 and CG5550

DIOPT Version :10

Sequence 1:NP_727376.2 Gene:CG1889 / 31928 FlyBaseID:FBgn0030164 Length:338 Species:Drosophila melanogaster
Sequence 2:NP_001246376.1 Gene:CG5550 / 36883 FlyBaseID:FBgn0034160 Length:250 Species:Drosophila melanogaster


Alignment Length:224 Identity:82/224 - (36%)
Similarity:110/224 - (49%) Gaps:37/224 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 QQHGVVRIRPRSNVEPFFVFCDQKVRNGGWTMVVNRYDGSEDFNRKWADYKIGFGPLTTEFFIGL 195
            ::.||.:|:..|:|  ..|:||..:...||.:|..|....|:|.|.|..|:.|||.|...|||||
  Fly    45 KKSGVQKIQVGSDV--IEVYCDVTIAGKGWLVVQRRVSVEENFYRNWTSYQTGFGDLKGNFFIGL 107

  Fly   196 DKLHQITSSDNYELLVQLQNRKQELRYALYDHFSIGSESEQYRLNVLGDYHGDAADALRDHTGKK 260
            :.|::|:|....||.::|.:...|.|||.|..|.:|:....|.:..||.|.|.|.|:|..|..:.
  Fly   108 NNLNKISSLQPQELYIELVDFAGEKRYAHYSVFHVGNVYSNYPITQLGAYSGTAGDSLSYHLYQP 172

  Fly   261 FSTHDRVNDENEQNCAAQQSGAFWY-----------------GGSCNLTNP--FGLYQRLLERDV 306
            |||.||.||....||||:..||:||                 ||  |.|:|  ||          
  Fly   173 FSTFDRDNDNATINCAARYMGAWWYRECLSRIPCSNLNGAYLGG--NHTDPALFG---------- 225

  Fly   307 DGFKGILWRGFLNGPKGSLKIVRMMVRPR 335
               .||:| |...|...|.|.|.:||||:
  Fly   226 ---SGIVW-GEWKGFTYSYKTVNIMVRPK 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1889NP_727376.2 FReD 123..335 CDD:238040 81/222 (36%)
CG5550NP_001246376.1 FReD 34..250 CDD:238040 81/222 (36%)

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