DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1889 and Fgb

DIOPT Version :10

Sequence 1:NP_727376.2 Gene:CG1889 / 31928 FlyBaseID:FBgn0030164 Length:338 Species:Drosophila melanogaster
Sequence 2:NP_064456.2 Gene:Fgb / 24366 RGDID:2604 Length:479 Species:Rattus norvegicus


Alignment Length:408 Identity:105/408 - (25%)
Similarity:163/408 - (39%) Gaps:114/408 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PPSLGNASSSS------CPVSALSGLTTRMQSLN------NEIASVKEQIGSLQEQ--------- 74
            ||..|......      ||    :|...|...||      |.||.:...|.|:.|.         
  Rat    77 PPDAGGCVHGDGDMGVLCP----TGCELRQTLLNHERPIKNSIAELNSNINSVSETSSVTFQYLT 137

  Fly    75 -LVDLRRAGSAPVVG----------------LASPNALASRFPFSHNSL------------DIEP 110
             |.|:.:...|.|..                |.....:....|.:...|            .:|.
  Rat   138 LLKDMWKKKQAQVKDNENVINEYSSILEDQKLYIDETVNDNIPLNLRVLRSILEDLRSKIQKLES 202

  Fly   111 QLLANGGAAAVPITPANCL------KQQHGVVR----------IRPRSNVEPFFVFCDQKVRNGG 159
            .:.|.......|.| .||.      |:...::|          |:|.::.:|:.|:||.|..|||
  Rat   203 DISAQTEYCHTPCT-VNCNIPVVSGKECEEIIRKGGETSEMYLIQPDTSSKPYRVYCDMKTENGG 266

  Fly   160 WTMVVNRYDGSEDFNRKWADYKIGFGPLTT------------EFFIGLDKLHQITSSDNYELLVQ 212
            ||::.||.|||.||.|||..||.|||.:.|            |:::|.||:.|:|.....|||::
  Rat   267 WTVIQNRQDGSVDFGRKWDPYKKGFGNIATNEDTKKYCGLPGEYWLGNDKISQLTRIGPTELLIE 331

  Fly   213 LQNRKQELRYALYDHFSIGSESEQYRLNVLGDYHGDAADALRD--------------HTGKKFST 263
            :::.|.:...|.|..|::.:|:.:|:::| ..|.|.|.:||.:              |.|..|||
  Rat   332 MEDWKGDKVKAHYGGFTVQTEANKYQVSV-NKYKGTAGNALMEGASQLVGENRTMTIHNGMFFST 395

  Fly   264 HDRVND-----ENEQNCAAQQSGAFWYGGSCNLTNPFGLYQ-------RLLERDVDGFKGILWRG 316
            :||.||     :..:.|:.:..|.:|| ..|:..||.|.|.       .:.:...|  .|::|..
  Rat   396 YDRDNDGWVTTDPRKQCSKEDGGGWWY-NRCHAANPNGRYYWGGLYSWDMSKHGTD--DGVVWMN 457

  Fly   317 FLNGPKGSLKIVRMMVRP 334
            : .|...|::.:.|.:||
  Rat   458 W-KGSWYSMRRMSMKIRP 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1889NP_727376.2 FReD 123..335 CDD:238040 80/266 (30%)
FgbNP_064456.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 20..82 2/4 (50%)
Beta-chain polymerization, binding distal domain of another fibrin. /evidence=ECO:0000250 33..35
Fib_alpha 79..222 CDD:462570 26/147 (18%)
Fibrinogen_C 225..474 CDD:395095 75/253 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.