DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG1889 and Tnc

DIOPT Version :10

Sequence 1:NP_727376.2 Gene:CG1889 / 31928 FlyBaseID:FBgn0030164 Length:338 Species:Drosophila melanogaster
Sequence 2:XP_008761976.1 Gene:Tnc / 116640 RGDID:621057 Length:2202 Species:Rattus norvegicus


Alignment Length:308 Identity:96/308 - (31%)
Similarity:142/308 - (46%) Gaps:51/308 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 LLVPPSLGNASSSSCPVSALSGLTTRMQSLNNEIASVKEQIGSLQEQLVDLRRAGSAPVVGLASP 92
            ::|.|.  ..|.|...:|..:..|.|:|:|:          |||:.:|:..    ....:||.  
  Rat  1932 VIVGPD--TTSYSLADLSPSTHYTARIQALS----------GSLRSKLIQT----IFTTIGLL-- 1978

  Fly    93 NALASRFPFSHNSLDIEPQLLANGGAAAVPITPANCLKQQHGVVRIRPRSN-VEPFFVFCDQKVR 156
                  :||..:.    .|.:.||...:             |:..|....: .:...|:||....
  Rat  1979 ------YPFPRDC----SQAMLNGDTTS-------------GLYTIYINGDKTQALEVYCDMTSD 2020

  Fly   157 NGGWTMVVNRYDGSEDFNRKWADYKIGFGPLTTEFFIGLDKLHQITSSDNYELLVQLQNRKQELR 221
            .|||.:.:.|.:|.|||.|.|..|..|||....||::|||.|.:||:...|||.|.||:. .|..
  Rat  2021 GGGWIVFLRRKNGREDFYRNWKAYAAGFGDRREEFWLGLDNLSKITAQGQYELRVDLQDH-GESA 2084

  Fly   222 YALYDHFSIGSESEQYRLNVLGDYHGDAADALRDHTGKKFSTHDRVNDENEQNCAAQQSGAFWYG 286
            ||:||.||:|....:|:|.|.| |.|.|.|::..|.|:.|||:|:..|....|||....||||| 
  Rat  2085 YAVYDRFSVGDAKSRYKLKVEG-YSGTAGDSMNYHNGRSFSTYDKDTDSAITNCALSYKGAFWY- 2147

  Fly   287 GSCNLTNPFGLYQRLLERDVDGFKGILWRGFLNGPKGSLKIVRMMVRP 334
            .:|:..|..|.|     .|.:..:|:.|..: .|.:.|::...|.:||
  Rat  2148 KNCHRVNLMGRY-----GDNNHSQGVNWFHW-KGHEYSIQFAEMKLRP 2189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1889NP_727376.2 FReD 123..335 CDD:238040 76/213 (36%)
TncXP_008761976.1 EGF_Tenascin 190..217 CDD:480934
EGF_Tenascin 252..280 CDD:480934
EGF_Tenascin 284..311 CDD:480934
EGF_Tenascin 315..341 CDD:480934
EGF_2 350..372 CDD:400365
EGF_2 380..403 CDD:400365
EGF_Tenascin 408..435 CDD:480934
EGF_Tenascin 439..466 CDD:480934
EGF_Tenascin 470..496 CDD:480934
EGF_Tenascin 501..528 CDD:480934
EGF_2 535..558 CDD:400365
EGF_Tenascin 563..589 CDD:480934
EGF_Tenascin 594..621 CDD:480934
FN3 624..710 CDD:238020
fn3 713..793 CDD:394996
FN3 <822..1234 CDD:442628
fn3 1257..1336 CDD:394996
fn3 1348..1417 CDD:394996
fn3 1437..1509 CDD:394996
fn3 1534..1606 CDD:394996
fn3 1622..1702 CDD:394996
FN3 <1719..>1958 CDD:442628 7/27 (26%)
fn3 1889..1961 CDD:394996 9/40 (23%)
Fibrinogen_C 1981..2190 CDD:395095 80/235 (34%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.