DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Idgf4 and Cht12

DIOPT Version :9

Sequence 1:NP_001285068.1 Gene:Idgf4 / 31926 FlyBaseID:FBgn0026415 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_726022.1 Gene:Cht12 / 246535 FlyBaseID:FBgn0050293 Length:470 Species:Drosophila melanogaster


Alignment Length:426 Identity:97/426 - (22%)
Similarity:182/426 - (42%) Gaps:75/426 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 AGSHHLLCYYDGNSFVREGLSKLILTDLEPALQYCTHLVYGYA-GINPSSNKLVSNNEKLDLDLG 85
            |..:::.|.||..|:..:|.|:.....|:..|  |||||.|.. |::..|.:|...::.|.|:..
  Fly    20 AKEYNVFCQYDLGSYYYKGRSQFFEWHLDSRL--CTHLVLGSGIGVDGDSGELRITDKILLLEKD 82

  Fly    86 SSLFRQVTGLK-RKYPAL-KVLLSVGGDKDTVDPENNKYLTLLESSNARIPFINSAHSLVKTYGF 148
                 :::.:| .|:.:: ||:.::||.::    :::.:..::.|...|..|.:|....:..:||
  Fly    83 -----KLSSVKTMKWDSIKKVMFTIGGWEE----DSSSFSRMVASPKKRDNFYSSMLEFMFRWGF 138

  Fly   149 DGLDLGWQFPKNKPKKVHGSIGKFWKGFKKIFSGDHVVDEKAEEHKEAFTALVRELKNAFRPDGY 213
            ||:.:.|::|                    ...|.|..|      ::.|..|:.||...||.:..
  Fly   139 DGVQIDWRYP--------------------TLLGGHPDD------RQNFVILLEELGLIFRKNQL 177

  Fly   214 ILGLSVLPNVNSSLF--FDVPAIINNLDYVNLHTYDFQTPERNNEVADFPAPIYELNERNPEFNV 276
            ||.::||...::.:.  :::|.|:|:.|:::|..:|.|.|.......:.|...|       |.:|
  Fly   178 ILMVAVLGRRDNRILESYNIPEIVNHSDFIHLMMHDEQDPYHLRLAYNAPLVGY-------EGSV 235

  Fly   277 NYQVKYWTGNRAPAAKINVGIATYGRAWKLTKDSGLTGLPPVAEADGVAPAGTQTQIPGLLSWPE 341
            ...:.:|..|.....|:.:||..:.|::.:.::....|    :...|......|:..||.:::.|
  Fly   236 TDSIMHWKRNGGAPEKLILGIPLFVRSFTMDRNQSTVG----SACKGPGRQTKQSHRPGFMTYNE 296

  Fly   342 VCAKLPNPANQHLKGADGPLRKVGDPTKRFGSYAYRSADDSGENGVWVGYEDPDTAAIKAEYVKR 406
            .|.:....:....:.|..|....||.                    ||.||:|.:...|...::.
  Fly   297 WCVQQSKWSRMFDQLAKVPYATRGDQ--------------------WVSYENPRSIWAKMHLLQE 341

  Fly   407 EGLGGIAVVDLSFDDFRGGCTGHDKFPILRQVKSKL 442
            ..|||.....:..|||||.|  .::..:||.:.|.|
  Fly   342 HKLGGAMAWTIDVDDFRGRC--GEQHGLLRVIFSAL 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Idgf4NP_001285068.1 GH18_IDGF 26..442 CDD:119352 95/420 (23%)
Glyco_18 27..420 CDD:214753 86/397 (22%)
Cht12NP_726022.1 GH18_chitinase-like 25..375 CDD:299167 95/419 (23%)
Glyco_hydro_18 47..355 CDD:279094 80/375 (21%)
ChtBD2 394..438 CDD:214696
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463816
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 115 1.000 Inparanoid score I1336
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11177
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X91
65.890

Return to query results.
Submit another query.