DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Idgf4 and chil-3

DIOPT Version :9

Sequence 1:NP_001285068.1 Gene:Idgf4 / 31926 FlyBaseID:FBgn0026415 Length:442 Species:Drosophila melanogaster
Sequence 2:NP_496128.1 Gene:chil-3 / 182432 WormBaseID:WBGene00007467 Length:447 Species:Caenorhabditis elegans


Alignment Length:408 Identity:84/408 - (20%)
Similarity:154/408 - (37%) Gaps:115/408 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 LQYCTHLVYGYAGINPSSNKLVSNNEKLDLDLGSSLFRQVTGLKRKYPA-LKVLLSVGGDKDTVD 116
            ||..||::|.:|  .|::..:..:.|:.     ...|:::....|:..: :||::||||     .
 Worm   118 LQMVTHIIYLFA--RPTNGVMTLDGERT-----RRKFQEMRSKAREVSSTVKVMISVGG-----H 170

  Fly   117 PENNKYLTLLESSNARIPFINSAHSLVKTYGFDGLDLGWQFPKNKPKKVHGSIGKFWKGFKKIFS 181
            ..:..:..::.:..:|..||.|..|.||....||:::.|.:||                      
 Worm   171 DHSGAFSAIMSNEASRSVFIKSIVSFVKNEDIDGIEIFWMWPK---------------------- 213

  Fly   182 GDHVVDEKAEEHKEA--FTALVRELKNAF--------RPDGYILGLSVLPNVNSSLFFDVPAIIN 236
                       |::.  ::..:::|:|.|        |.:.||:.| ::|. .|...||....:.
 Worm   214 -----------HRDVNNYSIFIQDLRNEFTELQKRTNRKNEYIISL-LVPK-KSYWSFDFEDFLK 265

  Fly   237 NLDYVNLHTYDFQTPERNNEVADFPAPIYELNERNPEFNVNYQVKYWTGNRAPAAKINVGIATYG 301
            .:|:.|:::..|    |..:|.. .:|:|....|    |::..:||:|......:|.|:.::.:|
 Worm   266 FVDFFNIYSTQF----REKQVGP-DSPLYGGEGR----NIDETMKYYTCKTGQPSKFNIFVSFHG 321

  Fly   302 RAWKLTKDSGLTGLPPVAEADGVAPAGTQTQIPGLLSWPEVC--------AKLPNPANQHLKGAD 358
            ..||..:      ||...:.|.:......|:....:.|.|:.        .|..|..........
 Worm   322 TFWKDAE------LPLRNDFDDIFKDKNLTKGAFAVRWRELLQQKWNLEDIKFHNLTKTSYIWIP 380

  Fly   359 GPLRKVGDPTKRFGSYAYRSADDSGENGVW-VGYEDPDTAAIKAEYVKREGLGGIAVVDLSFDDF 422
            ||      ||                   | :..||..:...|.:||....:|||.:..:..|| 
 Worm   381 GP------PT-------------------WFMTLEDKRSLREKTKYVADYNIGGITMWTIDQDD- 419

  Fly   423 RGGCTGHDKFPILRQVKS 440
                   |...:|:.|.|
 Worm   420 -------DDHTLLKVVSS 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Idgf4NP_001285068.1 GH18_IDGF 26..442 CDD:119352 84/408 (21%)
Glyco_18 27..420 CDD:214753 78/386 (20%)
chil-3NP_496128.1 Glyco_18 100..418 CDD:214753 78/386 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164373
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.700

Return to query results.
Submit another query.