DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPB and Ca14

DIOPT Version :9

Sequence 1:NP_001245593.1 Gene:CARPB / 31915 FlyBaseID:FBgn0052698 Length:327 Species:Drosophila melanogaster
Sequence 2:NP_001103125.1 Gene:Ca14 / 791259 RGDID:1599277 Length:337 Species:Rattus norvegicus


Alignment Length:325 Identity:91/325 - (28%)
Similarity:150/325 - (46%) Gaps:33/325 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LLLARMQVLLAVSWEDWWTYDGISGPAFWGLINPEWSLCNKGRRQSPVNLEPQRLLFDPNL---R 74
            :||.::..:||......|||:|..|...|....||   |. |..|||::::...::|||:|   :
  Rat     5 VLLLKVTWILAADGGHHWTYEGPHGQDHWPASYPE---CG-GNAQSPIDIQTDGVIFDPDLPTVQ 65

  Fly    75 PMHIDKHRISGL-ITNTGHSVIFTAGNDTVANYDGMQTPVNISGGPLSYRYRFHEIHMHYGLNDQ 138
            |...|:.....| :.|.||:|             .:..|..:..|.|..:|...::|:|:|....
  Rat    66 PHGYDQLGTEPLDLHNNGHTV-------------QLSLPPTLHLGGLPRKYTAAQLHLHWGQKGT 117

  Fly   139 F-GSEHSVEGYTFPAEIQIFGYNSQLYANFSDALNRAQGIVGVSILLQLGDLSNAELRMLTDQLE 202
            . ||||.:......||:.:..|:|:.|.:.|:|..:.||:..:.||:::|:..|.....:...|.
  Rat   118 LKGSEHQINSEATAAELHVVHYDSESYGSLSEAAQKPQGLAVLGILIEVGETENPAYDHILSHLH 182

  Fly   203 RIRYGGDEAFVKRLSIRGLLP-DTDHYMTYDGSTTAPACHETVTWVVLNKPIYITKQQLHALRRL 266
            .:||...:..|...::|.||| ..:.:..|:||.|.|.|:::|.|.|.|:...|:..||..|:..
  Rat   183 EVRYKDQKTSVPPFNVRELLPQQLEQFFRYNGSLTTPPCYQSVLWTVFNRRAQISMGQLEKLQET 247

  Fly   267 MQGSPDHPKAPLGNNYRPPQPLLHR----------PIRTNIDFKTTKSNGKAACPTMYREVYYKA 321
            :..:.:.|..||..|||.||||..|          |:.|..:.........|.|..:...:|:.|
  Rat   248 LSSTEEDPSEPLVQNYRVPQPLNQRTIFASFIQVGPLYTTGEMLGLGMGISAGCLCLLLTIYFIA 312

  Fly   322  321
              Rat   313  312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CARPBNP_001245593.1 alpha_CARP_X_XI_like 37..298 CDD:239395 79/276 (29%)
Ca14NP_001103125.1 alpha_CA_XII_XIV 29..278 CDD:239400 77/265 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339431
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3338
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.750

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