DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CARPB and ca6

DIOPT Version :9

Sequence 1:NP_001245593.1 Gene:CARPB / 31915 FlyBaseID:FBgn0052698 Length:327 Species:Drosophila melanogaster
Sequence 2:NP_001072482.1 Gene:ca6 / 779937 XenbaseID:XB-GENE-494019 Length:121 Species:Xenopus tropicalis


Alignment Length:89 Identity:26/89 - (29%)
Similarity:48/89 - (53%) Gaps:2/89 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 LSYRYRFHEIHMHYG--LNDQFGSEHSVEGYTFPAEIQIFGYNSQLYANFSDALNRAQGIVGVSI 182
            |:..|...::|:|:|  .::..||||:::|..:.||:.:..|||..|..|.:|.::..|:..::.
 Frog     7 LNSLYTAVQMHLHWGGLESETSGSEHTIDGMRYLAELHVVHYNSGTYKTFDEAKDKPNGLAVLAF 71

  Fly   183 LLQLGDLSNAELRMLTDQLERIRY 206
            |...|:..|........:|.:|||
 Frog    72 LYTTGNYENTYYSDFISKLSKIRY 95

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CARPBNP_001245593.1 alpha_CARP_X_XI_like 37..298 CDD:239395 26/89 (29%)
ca6NP_001072482.1 alpha_CA <1..>96 CDD:320708 26/89 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.