DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPB and Car12

DIOPT Version :9

Sequence 1:NP_001245593.1 Gene:CARPB / 31915 FlyBaseID:FBgn0052698 Length:327 Species:Drosophila melanogaster
Sequence 2:XP_006511611.1 Gene:Car12 / 76459 MGIID:1923709 Length:355 Species:Mus musculus


Alignment Length:291 Identity:90/291 - (30%)
Similarity:147/291 - (50%) Gaps:25/291 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LQALCCTLLLLLARMQVLLAVSWEDWWTYDGISGPAFWGLINPEWSLCNKGRRQSPVNLEPQRLL 68
            |:|....||::|.:.....|......|||.|.:|...|   :.::..|. |..|||::|....|.
Mouse     6 LRATVVLLLVILKKQPSSSAPLNGSKWTYVGPAGEKNW---SKKYPSCG-GLLQSPIDLHSDILQ 66

  Fly    69 FDPNLRPMHIDKHRISG----LITNTGHSVIFTAGNDTVANYDGMQTPVNISGGPLSYRYRFHEI 129
            :|.:|.|:....:.:|.    .:||.||||.....:|..  ..|:|          .:.||..::
Mouse    67 YDASLAPLQFQGYNVSVEKLLNLTNDGHSVRLNLNSDMY--IQGLQ----------PHHYRAEQL 119

  Fly   130 HMHYG-LNDQFGSEHSVEGYTFPAEIQIFGYNSQLYANFSDALNRAQGIVGVSILLQLGDLSNAE 193
            |:|:| .||..||||:|.|..|.||:.|..|||.||.:||.|.::::|:..:::|:::|. :|..
Mouse   120 HLHWGNRNDPHGSEHTVSGKHFAAELHIVHYNSDLYPDFSTASDKSEGLAVLAVLIEIGS-ANPS 183

  Fly   194 LRMLTDQLERIRYGGDEAFVKRLSIRGLLPDT-DHYMTYDGSTTAPACHETVTWVVLNKPIYITK 257
            ...:...|:.::|.|.:..:...:|..|||:: ..|..|:||.|.|.|:.||.|.|...|:.|::
Mouse   184 YDKIFSHLQHVKYKGQQVLIPGFNIEELLPESPGEYYRYEGSLTTPPCYPTVLWTVFRNPVQISQ 248

  Fly   258 QQLHALRRLMQGS--PDHPKAPLGNNYRPPQ 286
            :||.||...:..:  .|.....:.||:|..|
Mouse   249 EQLLALETALYFTHMDDPTPREMINNFRQVQ 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CARPBNP_001245593.1 alpha_CARP_X_XI_like 37..298 CDD:239395 80/258 (31%)
Car12XP_006511611.1 alpha_CA 39..290 CDD:381753 80/258 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167835812
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3338
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.750

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