DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CARPB and ca5b

DIOPT Version :10

Sequence 1:NP_572581.1 Gene:CARPB / 31915 FlyBaseID:FBgn0052698 Length:327 Species:Drosophila melanogaster
Sequence 2:NP_001039155.1 Gene:ca5b / 733981 XenbaseID:XB-GENE-1003819 Length:319 Species:Xenopus tropicalis


Alignment Length:246 Identity:78/246 - (31%)
Similarity:124/246 - (50%) Gaps:10/246 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 GRRQSPVNLEPQRLLFDPNLRPMHIDKHRISGL-ITNTGHSVIFTAGNDTVANYDGMQTPVNISG 117
            |.||||:|:..:..:|.|.|.|:|......:.| |.|.|:|..        ..||.......:||
 Frog    63 GSRQSPINIRIRDSVFHPQLAPVHTQYDPNTCLYIWNNGYSFF--------VEYDDSTDKSTVSG 119

  Fly   118 GPLSYRYRFHEIHMHYGLNDQFGSEHSVEGYTFPAEIQIFGYNSQLYANFSDALNRAQGIVGVSI 182
            |||...:|..:.|.|:|.|:.:||||:|:...||||:.:..:|...|..|.:|:....|:..:.:
 Frog   120 GPLENPFRLKQFHFHWGRNNDWGSEHTVDSRVFPAELHLVHWNCSKYRTFEEAIMEPNGLAVIGV 184

  Fly   183 LLQLGDLSNAELRMLTDQLERIRYGGDEAFVKRLSIRGLLPDTDHYMTYDGSTTAPACHETVTWV 247
            .|::|. .:.:|:.|.|.|..:||..............|||....|.||.||.|.|...|:|||:
 Frog   185 FLKVGK-HHEKLQKLVDILPSVRYKDALTEFNYFDSSCLLPSCGDYWTYSGSLTTPPLTESVTWI 248

  Fly   248 VLNKPIYITKQQLHALRRLMQGSPDHPKAPLGNNYRPPQPLLHRPIRTNID 298
            ::.|||.:...||...|.|:..:....:..:.:|:||.|||::|.:.::.:
 Frog   249 IMKKPIEVDHSQLAVFRSLLFTAVGEEERYMVDNFRPLQPLMNRTVHSSFE 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CARPBNP_572581.1 alpha_CARP_X_XI_like 37..298 CDD:239395 78/244 (32%)
ca5bNP_001039155.1 alpha_CA_V 63..298 CDD:239392 78/243 (32%)

Return to query results.
Submit another query.