DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPB and car15

DIOPT Version :9

Sequence 1:NP_001245593.1 Gene:CARPB / 31915 FlyBaseID:FBgn0052698 Length:327 Species:Drosophila melanogaster
Sequence 2:XP_005169278.1 Gene:car15 / 568143 ZFINID:ZDB-GENE-091204-152 Length:312 Species:Danio rerio


Alignment Length:318 Identity:92/318 - (28%)
Similarity:137/318 - (43%) Gaps:40/318 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LLLLLARMQVLLAVSWEDWWTYD-GISGPAFWGLINPEWSLCNK--GRRQSPVNLEPQRLLFDPN 72
            :::|:..|.|||....:|.:.|| ....|..||...|.   |:.  ....||:||       |.:
Zfish     3 MMILMLMMSVLLLARTDDDFCYDEDHCDPYAWGDSYPS---CHPLLDSHHSPINL-------DHH 57

  Fly    73 LRPMH-IDKHRISGL---------ITNTGHSVIFTAGNDTVANYDGMQTPVNISGGPLSYRYRFH 127
            |...| :|..::.|.         :||.||||:...|       ||||    :|||.|...||..
Zfish    58 LMKNHSLDSLQLHGFNLTHKGQWWLTNQGHSVVLEVG-------DGMQ----VSGGGLPATYRTF 111

  Fly   128 EIHMHYGLNDQFGSEHSVEGYTFPAEIQIFGYNSQLYANFSDALNRAQGIVGVSILLQLGDLSNA 192
            ::|.|:|.....||||:::...||.|:.|....| .:.|.:.||....||..:.:.:.:..|.|.
Zfish   112 QLHFHWGSVSSNGSEHTLDHLRFPMEMHIVNIKS-THPNLTSALEDPTGIAVLGVFVDVTYLHNE 175

  Fly   193 ELRMLTDQLERIRYGGDEAFVKRLSIRGLLPDTD--HYMTYDGSTTAPACHETVTWVVLNKPIYI 255
            ..:.::..|..:.|.|....:|...:..|||..:  .|..|.||.|.|.|.|.|.|.:...|:||
Zfish   176 NFQSISSALSYVAYKGQTKSIKPFPLVNLLPQNNLTQYYRYHGSLTTPPCSEVVLWTIYEVPVYI 240

  Fly   256 TKQQLHALRRLMQGSPDHP--KAPLGNNYRPPQPLLHRPIRTNIDFK-TTKSNGKAAC 310
            :..|.......:..:.:..  :|.|.:|||...|...||:..:.|.| .|......||
Zfish   241 SWAQFEQFVSGIYSTEEEAEIQALLHDNYRHIHPTYSRPVYASKDAKLLTNGVSSLAC 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CARPBNP_001245593.1 alpha_CARP_X_XI_like 37..298 CDD:239395 79/276 (29%)
car15XP_005169278.1 alpha_CA_IV_XV_like 46..282 CDD:239391 74/254 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3338
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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