DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPB and ptprga

DIOPT Version :9

Sequence 1:NP_001245593.1 Gene:CARPB / 31915 FlyBaseID:FBgn0052698 Length:327 Species:Drosophila melanogaster
Sequence 2:NP_001316793.1 Gene:ptprga / 561197 ZFINID:ZDB-GENE-101101-4 Length:1414 Species:Danio rerio


Alignment Length:331 Identity:89/331 - (26%)
Similarity:143/331 - (43%) Gaps:57/331 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LLQALCC----------TLLLLLARMQVLLA------------------VSWEDWWTYDGISGP- 38
            ||:..||          :|:|..|.....||                  .:.|.:|.|.|..|| 
Zfish     4 LLRPRCCCWWIPPLLFSSLVLRWAHCHPALAEGDKSENHDRPIGDRHRRAAEESYWAYSGTYGPD 68

  Fly    39 AFWGLINPEWSLCNKGRRQSPVNLEPQRLLFDPNLRPMHID------KHRISGLITNTGHSVIFT 97
            ..|....||   |.: |.|||:|:..|........:.:.:|      .::.|  :.|||.:|...
Zfish    69 TGWAAAFPE---CQE-RNQSPINIADQDTKVSMEYQELTLDGFDAESSNKTS--MKNTGKTVAIF 127

  Fly    98 AGNDTVANYDGMQTPVNISGGPLSYRYRFHEIHMHYG-LNDQFGSEHSVEGYTFPAEIQIFGYNS 161
            ..:|..           :.|..|..|::..::..|:| .|...|||||:.|..||.|:|||.|||
Zfish   128 LKDDYF-----------VRGAGLPGRFKAEKVEFHWGQSNGSDGSEHSINGRRFPVEMQIFMYNS 181

  Fly   162 QLYANFSDALNRAQGIVGVSILLQLGDLSNAELRMLTDQLERIRYGGDEAFVKRLSIRGLLPDT- 225
            ..:.:.:.|:...:.|..:::..|:....|..:..:...|..:.:...|.|::...:|.|||.: 
Zfish   182 DDFDSLNTAIREKRVIAAMAVFFQVDFKDNPAVDPIIHGLRGVVHHEKETFLEPFVLRDLLPSSI 246

  Fly   226 DHYMTYDGSTTAPACHETVTWVVLNKPIYITKQQLHALRRLM-QGSPDHPKAP--LGNNYRPPQP 287
            ..|..|.||.|.|.|.:.|.|:|.::|:.::.:||.|...:. ....||.|:.  |.||:||.|.
Zfish   247 GSYYRYIGSLTTPPCSKVVEWIVFSRPVLLSYKQLEAFYSIFTTEQQDHVKSVEYLRNNFRPLQS 311

  Fly   288 LLHRPI 293
            |.:|.:
Zfish   312 LDNREV 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CARPBNP_001245593.1 alpha_CARP_X_XI_like 37..298 CDD:239395 76/269 (28%)
ptprgaNP_001316793.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3338
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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