back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CARPB and Car5b

DIOPT Version :9

Sequence 1:	NP_001245593.1	Gene:	CARPB / 31915	FlyBaseID:	FBgn0052698	Length:	327	Species:	Drosophila melanogaster
Sequence 2:	NP_851832.2	Gene:	Car5b / 56078	MGIID:	1926249	Length:	317	Species:	Mus musculus

Alignment Length:	308	Identity:	87/308 - (28%)
Similarity:	148/308 - (48%)	Gaps:	36/308 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly    12 LLLLARMQVLLAVS-----WEDWW---------------TY--DGISGPAFWGLINPEWSLCNKG 54
            :.::..::|:|.||     |...|               ||  ...:.|..|..::    |...|
Mouse     1 MAVMNHLRVILQVSSSTLPWRRCWVPRLVPRRSCSLYTCTYRTRNRALPPLWENLD----LVPAG 61

  Fly    55 RRQSPVNLEPQRLLFDPNLRPMHIDKHRISGL-ITNTGHSVIFTAGNDTVANYDGMQTPVNISGG 118
            .||||:|:..:..::||.|:|:.|.....:.| |.|.|:|.:....:.|..:.        :.||
Mouse    62 DRQSPINIRWRDSVYDPGLKPLTISYDPATCLHIWNNGYSFLVEFEDSTDKSV--------VEGG 118

  Fly   119 PLSYRYRFHEIHMHYGLNDQFGSEHSVEGYTFPAEIQIFGYNSQLYANFSDALNRAQGIVGVSIL 183
            ||.:.||..:.|.|:|..|.:||||:|:...:|||:.:..:|:..:.:|.||.....|:..:.:.
Mouse   119 PLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFESFEDAALEENGLAVIGVF 183

  Fly   184 LQLGDLSNAELRMLTDQLERIRYGGDEAFVKRLSIRGLLPDTDHYMTYDGSTTAPACHETVTWVV 248
            |:||. .:.||:.|.|.|..|::..............|:|....|.||.||.|.|...|:|||::
Mouse   184 LKLGK-HHKELQKLVDTLPSIKHKDTLVEFGSFDPSCLMPTCPDYWTYSGSLTTPPLSESVTWII 247

  Fly   249 LNKPIYITKQQLHALRRLMQGSPDHPKAPLGNNYRPPQPLLHRPIRTN 296
            ..:|:.:.:.||...|.|:..|....:..:.:|:||.|||::|.:|::
Mouse   248 KKQPVEVDRDQLEQFRTLLFTSEGEKEKRMVDNFRPLQPLMNRTVRSS 295

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.