DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPB and Ca5a

DIOPT Version :9

Sequence 1:NP_001245593.1 Gene:CARPB / 31915 FlyBaseID:FBgn0052698 Length:327 Species:Drosophila melanogaster
Sequence 2:NP_062166.1 Gene:Ca5a / 54233 RGDID:2243 Length:304 Species:Rattus norvegicus


Alignment Length:314 Identity:95/314 - (30%)
Similarity:139/314 - (44%) Gaps:45/314 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LLLLARMQVLLAVSWEDW------------------WTYDGISGPAFWGLINPEWSLCNKGRRQS 58
            |.:|..|..|.|...:.|                  || ..:|.|.              |.:||
  Rat    15 LAILRHMGPLCATRPQHWRFQHSYAEKHSNCARHPLWT-GPVSSPG--------------GTQQS 64

  Fly    59 PVNLEPQRLLFDPNLRPMHIDKHRIS-GLITNTGHSVIFTAGNDTVANYDGMQTPVNISGGPLSY 122
            |:|::....::||.|.|:.:.....| ..:.|||:  .|....|......|      ||||||..
  Rat    65 PINIQWTDSVYDPKLAPLRVSYDAASCRYLWNTGY--FFQVEFDDSCEESG------ISGGPLGN 121

  Fly   123 RYRFHEIHMHYGLNDQFGSEHSVEGYTFPAEIQIFGYNSQLYANFSDALNRAQGIVGVSILLQLG 187
            .||..:.|.|:|..|::||||.|:|:.:|||:.:..:||..|.|:..|.....|:..:.:.|:||
  Rat   122 HYRLKQFHFHWGATDEWGSEHMVDGHAYPAELHLVHWNSMKYENYKKATTGENGLAVIGVFLKLG 186

  Fly   188 DLSNAELRMLTDQLERIRYGGDEAFVKRLSIRGLLPDTDHYMTYDGSTTAPACHETVTWVVLNKP 252
            ....| |:.|.|.|..:|:...:..:.......|||....|.||.||.|.|...|:|||:|...|
  Rat   187 AHHEA-LQRLVDILPEVRHKDTQVTMGPFDPSCLLPACRDYWTYPGSLTTPPLAESVTWIVHKMP 250

  Fly   253 IYITKQQLHALRRLMQGSPDHPKAPLGNNYRPPQPLLHRPIRTNIDFKT--TKS 304
            |.::..||...|.|:.......:..:.||:||.|||..|.:|::.....  |||
  Rat   251 IEVSPSQLSTFRTLLFSGRGEDEEVMVNNFRPLQPLRGRNVRSSFQVPRVGTKS 304

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CARPBNP_001245593.1 alpha_CARP_X_XI_like 37..298 CDD:239395 83/261 (32%)
Ca5aNP_062166.1 alpha_CA 60..295 CDD:412109 82/243 (34%)