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Protein Alignment CARPB and Ca3

DIOPT Version :9

Sequence 1:	NP_001245593.1	Gene:	CARPB / 31915	FlyBaseID:	FBgn0052698	Length:	327	Species:	Drosophila melanogaster
Sequence 2:	NP_062165.2	Gene:	Ca3 / 54232	RGDID:	2241	Length:	260	Species:	Rattus norvegicus

Alignment Length:	274	Identity:	94/274 - (34%)
Similarity:	141/274 - (51%)	Gaps:	21/274 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly    30 WTYDGISGPAFWGLINPEWSLCNKGRRQSPVNLEPQRLLFDPNLRPMHIDKHRISG-LITNTGHS 93
            |.|...:||..|..:.|    ..||..|||:.|..:.:..||:|:|..:.....|. .|.|.|.:
  Rat     5 WGYASHNGPEHWHELYP----IAKGDNQSPIELHTKDIRHDPSLQPWSVSYDPGSAKTILNNGKT 65

  Fly    94 --VIFTAGNDTVANYDGMQTPVNISGGPLSYRYRFHEIHMHYGLNDQFGSEHSVEGYTFPAEIQI 156
              |:|   :||   :|...    :.|||||..||..:.|:|:|.:|..||||:|:|..:.||:.:
  Rat    66 CRVVF---DDT---FDRSM----LRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120

  Fly   157 FGYNSQLYANFSDALNRAQGIVGVSILLQLGDLSNAELRMLTDQLERIRYGGDEAFVKRLSIRGL 221
            ..:|.: |..|.:||.:..||..|.|.|::| ....|.::|.|.|::|:..|.||.........|
  Rat   121 VHWNPK-YNTFGEALKQPDGIAVVGIFLKIG-REKGEFQILLDALDKIKTKGKEAPFNHFDPSCL 183

  Fly   222 LPDTDHYMTYDGSTTAPACHETVTWVVLNKPIYITKQQLHALRRLMQGSPDHPKAPLGNNYRPPQ 286
            .|....|.||.||.|.|.|.|.:.|::|.:|:.::..|:..||.|...:.:.|..||..|:||||
  Rat   184 FPACRDYWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLFASAENEPPVPLVGNWRPPQ 248

  Fly   287 PLLHRPIRTNIDFK 300
            |:..|.:|.:  ||
  Rat   249 PIKGRVVRAS--FK 260

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.