DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPB and ca4c

DIOPT Version :9

Sequence 1:NP_001245593.1 Gene:CARPB / 31915 FlyBaseID:FBgn0052698 Length:327 Species:Drosophila melanogaster
Sequence 2:NP_001373159.1 Gene:ca4c / 407683 ZFINID:ZDB-GENE-080815-6 Length:309 Species:Danio rerio


Alignment Length:300 Identity:86/300 - (28%)
Similarity:148/300 - (49%) Gaps:39/300 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LLARMQVLLAV---SWEDWWTYDG-------ISGPAFWGLINPEWSLCNKGRRQSPVNLEPQRLL 68
            :|:...||||:   |.|  |.|..       ..||:.|.:   .::.|. |::|||:|:...::.
Zfish     4 ILSLSSVLLALKLCSGE--WCYQSQLSCNHTCEGPSQWKI---NYTSCG-GQKQSPINIITSKVK 62

  Fly    69 FDPNLRPM----HIDKHRISGLITNTGHSVIFTAGNDTVANYDGMQTPVNISGGPLSYRYRFHEI 129
            :||.|...    |.|...:|  :.|.|||..||           :....::|||.|..:|:..:.
Zfish    63 YDPKLTSFIFHGHEDAFNMS--VENHGHSAHFT-----------LPPSAHLSGGGLKGKYKAVQF 114

  Fly   130 HMHYGLNDQFGSEHSVEGYTFPAEIQIFGYNSQLYANFSDALNRAQGIVGVSILLQLGDLSNAEL 194
            |:|:|.|...||||||:|..:|.|:.|. |..:.|.|.:.||..:.|:..::...::..|.|.:.
Zfish   115 HLHWGENGSQGSEHSVDGERYPMELHIV-YIGEEYINLTKALQNSTGVAVLAFFFEVTALQNQKF 178

  Fly   195 RMLTDQLERIRYGGDEAFVKRLSIRGLLP--DTDHYMTYDGSTTAPACHETVTWVVLNKPIYITK 257
            ..:.:.|:::|:....:.|:...:..::|  ::..|..|.||.|.|:|.|.|.|.|..:.|.|:|
Zfish   179 ERIIEALKKVRHENTTSKVENFKLSDIIPQVNSQKYYRYSGSLTTPSCEEAVLWTVFQQTIGISK 243

  Fly   258 QQLHALRRLMQGSPDHPKAPLGNNYRPPQPLLHRPIRTNI 297
            .|:.::.:|:....|.|.|.:   :||.|.|..|.:.|::
Zfish   244 MQMESMDKLLLFGTDKPMAGI---FRPVQNLNERVVYTSV 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CARPBNP_001245593.1 alpha_CARP_X_XI_like 37..298 CDD:239395 77/266 (29%)
ca4cNP_001373159.1 alpha_CA_IV_XV_like 48..277 CDD:239391 72/245 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579122
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3338
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.750

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