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Protein Alignment CARPB and Car1

DIOPT Version :9

Sequence 1:	NP_001245593.1	Gene:	CARPB / 31915	FlyBaseID:	FBgn0052698	Length:	327	Species:	Drosophila melanogaster
Sequence 2:	NP_001101130.1	Gene:	Car1 / 310218	RGDID:	1309780	Length:	261	Species:	Rattus norvegicus

Alignment Length:	271	Identity:	87/271 - (32%)
Similarity:	147/271 - (54%)	Gaps:	20/271 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly    30 WTYDGISGPAFWGLINPEWSLCNKGRRQSPVNLEPQRLLFDPNLRPMHIDKHRISGL-ITNTGHS 93
            |.||..:||..|..:.|   :.| |..|||::::......|.:|:|:.:..:..:.. |.|.|||
  Rat     6 WGYDSKNGPDQWSKLYP---IAN-GNNQSPIDIKTSEAKHDSSLKPVSVSYNPATAKEIVNVGHS 66

  Fly    94 --VIF-TAGNDTVANYDGMQTPVNISGGPLSYRYRFHEIHMHYGLNDQFGSEHSVEGYTFPAEIQ 155
              |:| .:.|.:|           :.||||:..||..:.|.|:|.::..||||:|:|..:..|:.
  Rat    67 FHVVFDDSSNQSV-----------LKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGAKYSGELH 120

  Fly   156 IFGYNSQLYANFSDALNRAQGIVGVSILLQLGDLSNAELRMLTDQLERIRYGGDEAFVKRLSIRG 220
            :..:||..|::.::|:::|.|:..:.:|:::|. :|..|:.:.|.|..::..|..|.........
  Rat   121 LVHWNSAKYSSAAEAISKADGLAIIGVLMKVGP-ANPNLQKVLDALSSVKTKGKRAPFTNFDPSS 184

  Fly   221 LLPDTDHYMTYDGSTTAPACHETVTWVVLNKPIYITKQQLHALRRLMQGSPDHPKAPLGNNYRPP 285
            |||.:..|.||.||.|.|..||:||||:..:.|.::.:||..||.|:..:...|..|:.:|:|||
  Rat   185 LLPSSLDYWTYFGSLTHPPLHESVTWVICKESISLSPEQLAQLRGLLSSAEGEPAVPVLSNHRPP 249

  Fly   286 QPLLHRPIRTN 296
            |||..|.:|.:
  Rat   250 QPLKGRTVRAS 260

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.