DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPB and Ca6

DIOPT Version :9

Sequence 1:NP_001245593.1 Gene:CARPB / 31915 FlyBaseID:FBgn0052698 Length:327 Species:Drosophila melanogaster
Sequence 2:NP_001128313.1 Gene:Ca6 / 298657 RGDID:70516 Length:312 Species:Rattus norvegicus


Alignment Length:280 Identity:86/280 - (30%)
Similarity:139/280 - (49%) Gaps:31/280 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 WTYDGISG--PAFWGLINPE-WSLCNKGRRQSPVNLEPQRLLFDPNLRPMHIDKHRISGL---IT 88
            |:|.|..|  .:.|    || :..|. |.||||::::.:.:.|..:|.|:|:..:...||   :|
  Rat    21 WSYSGDDGLEESRW----PEKYPSCG-GERQSPIDVKRREVHFSSSLLPLHMVNYEEEGLELSMT 80

  Fly    89 NTGHSVIFTAGNDTVANYDGMQTPVNISGGPLSYRYRFHEIHMHYGLNDQ--FGSEHSVEGYTFP 151
            |.||:|..|..| |::..|        |.|.:   ||..::|.|:|..|.  .||||:::|....
  Rat    81 NNGHTVQITLPN-TMSMRD--------SDGTV---YRTKQMHFHWGGRDSEISGSEHTIDGMRHA 133

  Fly   152 AEIQIFGYNSQLYANFSDALNRAQGIVGVSILLQLGDLS-NAELRMLTDQLERIRYGGDEAFVKR 215
            .||.:..:|.: |..:..|:::..|:..:::|:::.|.: |........:||.::|.|....::.
  Rat   134 IEIHLVHFNEK-YETYEKAVDQPDGLAVMAVLVKVEDYTENDYYSTFISELENVKYTGQTTTLRN 197

  Fly   216 LSIRGLLP-DTDHYMTYDGSTTAPACHETVTWVVLNKPIYITKQQLHALRRLMQGSPDHPKAPLG 279
            ::||.:|| |..||.||.||.|.|.|.|.|.|.|......|:|.|   ..|:.....||....:.
  Rat   198 VNIRNMLPGDIRHYYTYQGSLTTPPCTENVKWFVFQDSATISKAQ---AERIENAVMDHHNQTIR 259

  Fly   280 NNYRPPQPLLHRPIRTNIDF 299
            |.||..|||.:|.:..|..:
  Rat   260 NGYRRTQPLHNRVVEANFPY 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CARPBNP_001245593.1 alpha_CARP_X_XI_like 37..298 CDD:239395 83/270 (31%)
Ca6NP_001128313.1 alpha_CA_VI 30..278 CDD:239399 82/268 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339468
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3338
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.750

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