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Protein Alignment CARPB and Ca4

DIOPT Version :9

Sequence 1:	NP_001245593.1	Gene:	CARPB / 31915	FlyBaseID:	FBgn0052698	Length:	327	Species:	Drosophila melanogaster
Sequence 2:	NP_062047.1	Gene:	Ca4 / 29242	RGDID:	2242	Length:	309	Species:	Rattus norvegicus

Alignment Length:	308	Identity:	83/308 - (26%)
Similarity:	137/308 - (44%)	Gaps:	45/308 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MELLQALCCTLLLLLARMQVLLAVSWED-WWTYD--------GISGPAFWGLINPEWSLCNKGRR 56
            |:||.|     ||.||    .:|.|.|| .|.|:        ..|||       .:|:...|..:
  Rat     1 MQLLLA-----LLALA----YVAPSTEDSHWCYEIQAKEPNSHCSGP-------EQWTGDCKKNQ 49

  Fly    57 QSPVNLEPQRLLFDPNLRP---MHIDKHRISGLITNTGHSVIFTAGNDTVANYDGMQTPVNISGG 118
            |||:|:...:...:|:|.|   :..|:.: ...:.|..|||..:.|.|           :.|.||
  Rat    50 QSPINIVTSKTKLNPSLTPFTFVGYDQKK-KWEVKNNQHSVEMSLGED-----------IYIFGG 102

  Fly   119 PLSYRYRFHEIHMHYGLNDQFGSEHSVEGYTFPAEIQIFGYNSQLYANFSDALNRAQGIVGVSIL 183
            .|..:|:..::|:|:......|||||::|..|..|:.:............|:.::.: |..::.:
  Rat   103 DLPTQYKAIQLHLHWSEESNKGSEHSIDGKHFAMEMHVVHKKMTTGDKVQDSDSKDK-IAVLAFM 166

  Fly   184 LQLGDLSNAELRMLTDQLERIRYGGDEAFVKRLSIRGLLPD---TDHYMTYDGSTTAPACHETVT 245
            :::|:..|...:.|.:.|.|:......:.|....::.:||:   ...|..|.||.|.|.|.|||.
  Rat   167 VEVGNEVNEGFQPLVEALSRLSKPFTNSTVSESCLQDMLPEKKKLSAYFRYQGSLTTPGCDETVI 231

  Fly   246 WVVLNKPIYITKQQLHALRRLMQGSPDHPKAPLGNNYRPPQPLLHRPI 293
            |.|..:||.|.|.|.....:.:....:. |..:.:|.||.|||.:|.:
  Rat   232 WTVFEEPIKIHKDQFLEFSKKLYYDQEQ-KLNMKDNVRPLQPLGNRQV 278

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.