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Protein Alignment CARPB and Car6

DIOPT Version :9

Sequence 1:	NP_001245593.1	Gene:	CARPB / 31915	FlyBaseID:	FBgn0052698	Length:	327	Species:	Drosophila melanogaster
Sequence 2:	NP_033932.2	Gene:	Car6 / 12353	MGIID:	1333786	Length:	317	Species:	Mus musculus

Alignment Length:	284	Identity:	77/284 - (27%)
Similarity:	132/284 - (46%)	Gaps:	45/284 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly    30 WTY---DGISGPAFWGLINPEWSLCNKGRRQSPVNLEPQRLLFDPNLRPMHI---DKHRISGLIT 88
            |:|   ||: |.:.|   :.::..|. |.||||::::.:.::|:|:|:|:.:   :|..:...:|
Mouse    21 WSYSGDDGV-GESQW---SEQYPSCG-GERQSPIDVKTEEVMFNPSLKPLSLVNYEKENLEFTMT 80

  Fly    89 NTGHSVIFTAGNDTVANYDGMQTPVNISGGPLSY-------RYRFHEIHMHYGLND--QFGSEHS 144
            |.||:                   |:|...|..|       .:.....|.|:|..|  ..||||:
Mouse    81 NNGHT-------------------VSIDLPPSMYLETSDGTEFISKAFHFHWGGRDWELSGSEHT 126

  Fly   145 VEGYTFPAEIQIFGYNSQLYANFSDALNRAQGIVGVSILLQLGDLS-NAELRMLTDQLERIRYGG 208
            ::|.....|.....:|.: |..:.:|.::..|:..:::|.::.:.: |.....:...|:.|...|
Mouse   127 IDGIRSIMEAHFVHFNKE-YGTYENAKDQKNGLAVLAVLFKIDEYAENTYYSDIISALKNIEKPG 190

  Fly   209 DEAFVKRLSIRGLLP-DTDHYMTYDGSTTAPACHETVTWVVLNKPIYITKQQLHALRRLMQGSPD 272
            :...:|..:||.||| |..||.||.||.|.|.|.|.|.|.||...:.::|.|:..:...:.   |
Mouse   191 ETTTLKDTTIRNLLPKDVHHYYTYPGSLTTPPCTENVQWFVLRDKVTLSKAQVVTIENSVM---D 252

  Fly   273 HPKAPLGNNYRPPQPLLHRPIRTN 296
            |....:.|.||..||..||.:..|
Mouse   253 HNNNTIQNGYRSTQPNNHRVVEAN 276

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.