DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPB and Car4

DIOPT Version :9

Sequence 1:NP_001245593.1 Gene:CARPB / 31915 FlyBaseID:FBgn0052698 Length:327 Species:Drosophila melanogaster
Sequence 2:NP_031633.1 Gene:Car4 / 12351 MGIID:1096574 Length:305 Species:Mus musculus


Alignment Length:301 Identity:88/301 - (29%)
Similarity:137/301 - (45%) Gaps:35/301 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MELLQALCCTLLLLLARMQVLLAVSWED-WWTYDGISGPAFWGLINPE-WSLCNKGRRQSPVNLE 63
            |:||.|     ||.||    .:|.|.|| .|.|:..:.......:.|| |....|..:|||:|:.
Mouse     1 MQLLLA-----LLALA----YVAPSTEDSGWCYEIQTKDPRSSCLGPEKWPGACKENQQSPINIV 56

  Fly    64 PQRLLFDPNLRPMHI---DKHRISGLITNTGHSVIFTAGNDTVANYDGMQTPVNISGGPLSYRYR 125
            ..|...:|.|.|..:   |:.: ...|.|..|:|..|.|....           |.||.|..||.
Mouse    57 TARTKVNPRLTPFILVGYDQKQ-QWPIKNNQHTVEMTLGGGAC-----------IIGGDLPARYE 109

  Fly   126 FHEIHMHYGLNDQFGSEHSVEGYTFPAEIQIFGYNSQLYANFSDALNRAQGIVGVSILLQLGDLS 190
            ..::|:|:...:..|||||::|..|..|:.|  .:.:|.::..|:.::   ...::.::::||..
Mouse   110 AVQLHLHWSNGNDNGSEHSIDGRHFAMEMHI--VHKKLTSSKEDSKDK---FAVLAFMIEVGDKV 169

  Fly   191 NAELRMLTDQLERIRYGGDEAFVKRLSIRGLLPDTDH---YMTYDGSTTAPACHETVTWVVLNKP 252
            |...:.|.:.|..|......:.|:..|::.:||.:..   |..|:||.|.|.|.|||.|.|..:|
Mouse   170 NKGFQPLVEALPSISKPHSTSTVRESSLQDMLPPSTKMYTYFRYNGSLTTPNCDETVIWTVYKQP 234

  Fly   253 IYITKQQLHALRRLMQGSPDHPKAPLGNNYRPPQPLLHRPI 293
            |.|.|.|.....:.:....|. |..:.:|.||.|||..|.:
Mouse   235 IKIHKNQFLEFSKNLYYDEDQ-KLNMKDNVRPLQPLGKRQV 274

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CARPBNP_001245593.1 alpha_CARP_X_XI_like 37..298 CDD:239395 74/264 (28%)
Car4NP_031633.1 alpha_CA_IV_XV_like 48..276 CDD:239391 70/245 (29%)