back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CARPB and Car3

DIOPT Version :9

Sequence 1:	NP_001245593.1	Gene:	CARPB / 31915	FlyBaseID:	FBgn0052698	Length:	327	Species:	Drosophila melanogaster
Sequence 2:	NP_031632.2	Gene:	Car3 / 12350	MGIID:	88270	Length:	260	Species:	Mus musculus

Alignment Length:	274	Identity:	95/274 - (34%)
Similarity:	140/274 - (51%)	Gaps:	21/274 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly    30 WTYDGISGPAFWGLINPEWSLCNKGRRQSPVNLEPQRLLFDPNLRPMHIDKHRISG-LITNTGHS 93
            |.|...:||..|..:.|    ..||..|||:.|..:.:..||:|:|........|. .|.|.|.:
Mouse     5 WGYASHNGPDHWHELYP----IAKGDNQSPIELHTKDIKHDPSLQPWSASYDPGSAKTILNNGKT 65

  Fly    94 --VIFTAGNDTVANYDGMQTPVNISGGPLSYRYRFHEIHMHYGLNDQFGSEHSVEGYTFPAEIQI 156
              |:|   :||   ||...    :.|||||..||..:.|:|:|.:|..||||:|:|..:.||:.:
Mouse    66 CRVVF---DDT---YDRSM----LRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120

  Fly   157 FGYNSQLYANFSDALNRAQGIVGVSILLQLGDLSNAELRMLTDQLERIRYGGDEAFVKRLSIRGL 221
            ..:|.: |..|.:||.:..||..|.|.|::| ....|.::|.|.|::|:..|.||.........|
Mouse   121 VHWNPK-YNTFGEALKQPDGIAVVGIFLKIG-REKGEFQILLDALDKIKTKGKEAPFTHFDPSCL 183

  Fly   222 LPDTDHYMTYDGSTTAPACHETVTWVVLNKPIYITKQQLHALRRLMQGSPDHPKAPLGNNYRPPQ 286
            .|....|.||.||.|.|.|.|.:.|::|.:|:.::..|:..||.|...:.:.|..||..|:||||
Mouse   184 FPACRDYWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLFSSAENEPPVPLVGNWRPPQ 248

  Fly   287 PLLHRPIRTNIDFK 300
            |:..|.:|.:  ||
Mouse   249 PVKGRVVRAS--FK 260

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.