back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CARPB and Car1

DIOPT Version :9

Sequence 1:	NP_001245593.1	Gene:	CARPB / 31915	FlyBaseID:	FBgn0052698	Length:	327	Species:	Drosophila melanogaster
Sequence 2:	NP_001077426.1	Gene:	Car1 / 12346	MGIID:	88268	Length:	261	Species:	Mus musculus

Alignment Length:	271	Identity:	89/271 - (32%)
Similarity:	145/271 - (53%)	Gaps:	20/271 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly    30 WTYDGISGPAFWGLINPEWSLCNKGRRQSPVNLEPQRLLFDPNLRPMHIDKHRISGL-ITNTGHS 93
            |.|...:||..|..:.|   :.| |..|||::::......|.:|:|:.|..:..:.. |.|.|||
Mouse     6 WGYGSENGPDQWSKLYP---IAN-GNNQSPIDIKTSEANHDSSLKPLSISYNPATAKEIVNVGHS 66

  Fly    94 --VIF-TAGNDTVANYDGMQTPVNISGGPLSYRYRFHEIHMHYGLNDQFGSEHSVEGYTFPAEIQ 155
              ||| .:.|.:|           :.||||:..||..:.|.|:|.::..||||:|:|..:..|:.
Mouse    67 FHVIFDDSSNQSV-----------LKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELH 120

  Fly   156 IFGYNSQLYANFSDALNRAQGIVGVSILLQLGDLSNAELRMLTDQLERIRYGGDEAFVKRLSIRG 220
            :..:||..|::.|:|:::|.|:..:.:|:::|. :|..|:.:.|.|..::..|..|.........
Mouse   121 LVHWNSAKYSSASEAISKADGLAILGVLMKVGP-ANPSLQKVLDALNSVKTKGKRAPFTNFDPSS 184

  Fly   221 LLPDTDHYMTYDGSTTAPACHETVTWVVLNKPIYITKQQLHALRRLMQGSPDHPKAPLGNNYRPP 285
            |||.:..|.||.||.|.|..||:||||:....|.::.:||..||.|:..:...|..|:.:|:|||
Mouse   185 LLPSSLDYWTYFGSLTHPPLHESVTWVICKDSISLSPEQLAQLRGLLSSAEGEPAVPVLSNHRPP 249

  Fly   286 QPLLHRPIRTN 296
            |||..|.:|.:
Mouse   250 QPLKGRTVRAS 260

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.