DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sp1 and sp2

DIOPT Version :9

Sequence 1:NP_001259388.1 Gene:Sp1 / 31913 FlyBaseID:FBgn0020378 Length:726 Species:Drosophila melanogaster
Sequence 2:XP_031749963.1 Gene:sp2 / 549560 XenbaseID:XB-GENE-968274 Length:588 Species:Xenopus tropicalis


Alignment Length:559 Identity:162/559 - (28%)
Similarity:221/559 - (39%) Gaps:164/559 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 TPLAMLAAQCNKLSNKSPPPLADAAV---------GKGFHPWKKS--PNSPAAGSSG-------- 91
            :|||:|||.|:|:.    ||..::.|         .|...|.|.:  |.||...|.|        
 Frog    51 SPLALLAATCSKIG----PPAVESTVTSAAPPRPARKRLVPIKPAPLPLSPGKTSIGLFSQAKGN 111

  Fly    92 ---------SSGGGGGG--------GGSSAGQHSPCAISAASSSSSSG------SSGGQSSRSLS 133
                     |:.|.|.|        .|...|::.....:.....:|.|      |.||.:..|.|
 Frog   112 IIQLQAPQLSTVGTGSGQLIFTIQNPGGKIGRYQTVQSTNQGLQNSFGNQIQLISDGGTALLSPS 176

  Fly   134 SSASTMVNITASRPLASSCAA-----VGGGST--------GSSSSASGSQSSS------------ 173
            ::.|..|.|..:.|..||...     .|.|.|        ..|::.:|:|..|            
 Frog   177 TNTSKHVPIKPAPPQPSSTLVKVPNNPGTGLTLTLPISNFSDSTTDTGTQLVSGKQNKKVRKKPP 241

  Fly   174 ---------------------TASAVAAAYGGDLYF----------------PNTSTSNMDNHHM 201
                                 ||..:..| |.:|..                |.|.|..:   .:
 Frog   242 PSIPVPGSPNQDQVETVVIETTAENILQA-GNNLLIVQSPSTGQHAVLQVMQPKTDTQLV---QI 302

  Fly   202 HQGLLGKVEAGAAAFGGVYSRHPYDWP---------------FNAVTHKEAASVNSGWWDMHSAA 251
            .|..|..|:|.:|....| .:.|...|               ..||..:||.:...   ...|:|
 Frog   303 PQQALRVVQAASATLPTV-PQKPVQTPECTPTQLYIRTASGDVQAVVMQEAPAAPQ---PCSSSA 363

  Fly   252 GSWLDMGGAGMHSTMANYASENYSSALSHSLLGSGQHLLQDTYKSMLPGQGV------GVGVGVG 310
            |..:...|    :.:.|...:..|.|   .:..:|..:..:|.:.....||:      ||.:.:.
 Frog   364 GPIVTQTG----TPVKNPLRKERSLA---KIAPAGSLINLNTTQLTTAAQGIQTININGVSMQMP 421

  Fly   311 MGGFSLPHSSPSAAAAAAATAAAAAGGSP-------QGGSPSTPSPRSQRRYAGRATCDCPNCQE 368
            :...|.|.....:....::...|.:|.||       :........|..:||   |..|.||||::
 Frog   422 VTITSTPGQPQLSVQNVSSGNVAISGLSPSQIQLQMEQALSGELQPGEKRR---RVACTCPNCKD 483

  Fly   369 AE--RLGPAGVHLRKKNIHSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDE 431
            .|  |.||.|   ||:  |.||||.||:.:.|||.|:||:|.|||||||||||.||.||||||||
 Frog   484 GEKGRWGPPG---RKR--HVCHIPECGRTFRKTSLLRAHVRLHTGERPFVCNWGFCTKRFTRSDE 543

  Fly   432 LQRHLRTH---TGEKRFACPVCNKRFMRSDHLAKHVKTH 467
            ||||.|||   ||:|||.||.|.|||.||||::||.|||
 Frog   544 LQRHARTHTGVTGDKRFECPQCQKRFTRSDHVSKHFKTH 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sp1NP_001259388.1 C2H2 Zn finger 390..409 CDD:275368 10/18 (56%)
zf-H2C2_2 401..428 CDD:290200 20/26 (77%)
C2H2 Zn finger 417..439 CDD:275368 18/21 (86%)
zf-H2C2_2 431..454 CDD:290200 17/25 (68%)
zf-C2H2 445..467 CDD:278523 14/21 (67%)
C2H2 Zn finger 447..467 CDD:275368 13/19 (68%)
sp2XP_031749963.1 SP2_N 27..498 CDD:411776 100/473 (21%)
C2H2 Zn finger 502..521 CDD:275368 10/18 (56%)
zf-H2C2_2 514..540 CDD:404364 20/25 (80%)
C2H2 Zn finger 529..551 CDD:275368 18/21 (86%)
zf-H2C2_2 543..571 CDD:404364 19/27 (70%)
C2H2 Zn finger 562..582 CDD:275368 13/19 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23235
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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