DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sp1 and sr

DIOPT Version :9

Sequence 1:NP_001259388.1 Gene:Sp1 / 31913 FlyBaseID:FBgn0020378 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001262693.1 Gene:sr / 42162 FlyBaseID:FBgn0003499 Length:1271 Species:Drosophila melanogaster


Alignment Length:624 Identity:151/624 - (24%)
Similarity:194/624 - (31%) Gaps:276/624 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 GSSAGQHSPCAISAASSSSSSGSSGGQSSRSLSSSASTMVNITASRPLASSCAAVGGGSTGSSSS 165
            |..||..||       .|:|.|:|.|     |.|...||.    ..||.|..|............
  Fly   760 GVLAGPMSP-------PSNSLGNSWG-----LPSPDKTMF----QPPLFSLPAHYATMQQQQQQQ 808

  Fly   166 ASGSQSSSTASAVAAAYGGDLYFPNTSTSNMDNHHMHQGLLGKVEAGAAA-----FGGVYSRHPY 225
            ....|......|..||           .|..|:        |:..|.|||     .|......|.
  Fly   809 QQQQQQQQQQQAAGAA-----------PSPYDD--------GRAAAAAAAQHAELLGLTMDCTPL 854

  Fly   226 DWPFNAVTHKEAASVNSGWWDMHSA---------------AGSWLDMGGAGMHSTMANYASENY- 274
            .......::..|::...|..|:||:               ...|||        :.|:||.:.. 
  Fly   855 LLKQPPPSYAGASAGFPGLGDLHSSHEQQLQQQQYVRSQPKYQWLD--------SPADYAQQQQQ 911

  Fly   275 ---------------------SSALSHSLLGSGQHLL--QDTYKSMLPGQGVGVGVGVGMGGFSL 316
                                 |::.|::.||.   |:  |:.|..|.|... |.|...|.||   
  Fly   912 VQQVQQQQQQQQTLVLPGPTSSASSSNAALGV---LIPKQENYPDMQPSSN-GTGYSGGSGG--- 969

  Fly   317 PHSSPSAAAAAAATAAAAAGGSPQGGSPSTPS-------------------PRSQRRYAGRATCD 362
                 |:||||||.|||||.......||||..                   |...|:|       
  Fly   970 -----SSAAAAAAAAAAAAAVQLAEYSPSTSKGHEILSQVYQQSTVPLKLVPVKPRKY------- 1022

  Fly   363 CPNCQEAERLGPAGVHLRKKNIHSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFT 427
             ||     |.....||.|.   ::|.:..|.:.:.::..|..|:|.|||::||.|.  .|.:.|:
  Fly  1023 -PN-----RPSKTPVHERP---YACPVENCDRRFSRSDELTRHIRIHTGQKPFQCR--ICMRSFS 1076

  Fly   428 RSDELQRHLRTHTGEKRFACPVCNKRFMRSDHLAKHVKTHNGTANHQANGHNGGLKKGSSESCSD 492
            |||.|..|:|||||||.|:|.:|.::|.|||...:|.|.|              ||:...:.   
  Fly  1077 RSDHLTTHIRTHTGEKPFSCDICGRKFARSDEKKRHAKVH--------------LKQRIKKE--- 1124

  Fly   493 SEEAANQSGESNGLGGVGSGPQTGGAGGGGGGSSSGNGAGTLAVSGSVTTGAGAGSGTGSSNSNS 557
                                                                             
  Fly  1125 ----------------------------------------------------------------- 1124

  Fly   558 NSGGSSGSVSGSVSGSGSHPGTPTSLHAHSANGTSSSLLGGGLHLATPHQMVAAGGSPVMLHQQQ 622
                       .|.|                                               :||
  Fly  1125 -----------KVRG-----------------------------------------------EQQ 1131

  Fly   623 QQQQHQQQQQQQQQQQHQQQQQQQHQQQQQQHQQQQQQH 661
            ||||.|||||||||||..||||:||....|||||.||.|
  Fly  1132 QQQQQQQQQQQQQQQQQLQQQQEQHHLSLQQHQQYQQHH 1170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sp1NP_001259388.1 C2H2 Zn finger 390..409 CDD:275368 4/18 (22%)
zf-H2C2_2 401..428 CDD:290200 11/26 (42%)
C2H2 Zn finger 417..439 CDD:275368 9/21 (43%)
zf-H2C2_2 431..454 CDD:290200 12/22 (55%)
zf-C2H2 445..467 CDD:278523 9/21 (43%)
C2H2 Zn finger 447..467 CDD:275368 8/19 (42%)
srNP_001262693.1 zf-C2H2 1036..1060 CDD:278523 5/23 (22%)
C2H2 Zn finger 1038..1060 CDD:275368 5/21 (24%)
zf-H2C2_2 1052..1077 CDD:290200 11/26 (42%)
C2H2 Zn finger 1068..1088 CDD:275368 9/21 (43%)
zf-H2C2_2 1080..1105 CDD:290200 13/24 (54%)
C2H2 Zn finger 1096..1116 CDD:275368 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23235
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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