DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sp1 and sr

DIOPT Version :10

Sequence 1:NP_001259388.1 Gene:Sp1 / 31913 FlyBaseID:FBgn0020378 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001262693.1 Gene:sr / 42162 FlyBaseID:FBgn0003499 Length:1271 Species:Drosophila melanogaster


Alignment Length:624 Identity:151/624 - (24%)
Similarity:194/624 - (31%) Gaps:276/624 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 GSSAGQHSPCAISAASSSSSSGSSGGQSSRSLSSSASTMVNITASRPLASSCAAVGGGSTGSSSS 165
            |..||..||       .|:|.|:|.|     |.|...||.    ..||.|..|............
  Fly   760 GVLAGPMSP-------PSNSLGNSWG-----LPSPDKTMF----QPPLFSLPAHYATMQQQQQQQ 808

  Fly   166 ASGSQSSSTASAVAAAYGGDLYFPNTSTSNMDNHHMHQGLLGKVEAGAAA-----FGGVYSRHPY 225
            ....|......|..||           .|..|:        |:..|.|||     .|......|.
  Fly   809 QQQQQQQQQQQAAGAA-----------PSPYDD--------GRAAAAAAAQHAELLGLTMDCTPL 854

  Fly   226 DWPFNAVTHKEAASVNSGWWDMHSA---------------AGSWLDMGGAGMHSTMANYASENY- 274
            .......::..|::...|..|:||:               ...|||        :.|:||.:.. 
  Fly   855 LLKQPPPSYAGASAGFPGLGDLHSSHEQQLQQQQYVRSQPKYQWLD--------SPADYAQQQQQ 911

  Fly   275 ---------------------SSALSHSLLGSGQHLL--QDTYKSMLPGQGVGVGVGVGMGGFSL 316
                                 |::.|::.||.   |:  |:.|..|.|... |.|...|.||   
  Fly   912 VQQVQQQQQQQQTLVLPGPTSSASSSNAALGV---LIPKQENYPDMQPSSN-GTGYSGGSGG--- 969

  Fly   317 PHSSPSAAAAAAATAAAAAGGSPQGGSPSTPS-------------------PRSQRRYAGRATCD 362
                 |:||||||.|||||.......||||..                   |...|:|       
  Fly   970 -----SSAAAAAAAAAAAAAVQLAEYSPSTSKGHEILSQVYQQSTVPLKLVPVKPRKY------- 1022

  Fly   363 CPNCQEAERLGPAGVHLRKKNIHSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFT 427
             ||     |.....||.|.   ::|.:..|.:.:.::..|..|:|.|||::||.|.  .|.:.|:
  Fly  1023 -PN-----RPSKTPVHERP---YACPVENCDRRFSRSDELTRHIRIHTGQKPFQCR--ICMRSFS 1076

  Fly   428 RSDELQRHLRTHTGEKRFACPVCNKRFMRSDHLAKHVKTHNGTANHQANGHNGGLKKGSSESCSD 492
            |||.|..|:|||||||.|:|.:|.::|.|||...:|.|.|              ||:...:.   
  Fly  1077 RSDHLTTHIRTHTGEKPFSCDICGRKFARSDEKKRHAKVH--------------LKQRIKKE--- 1124

  Fly   493 SEEAANQSGESNGLGGVGSGPQTGGAGGGGGGSSSGNGAGTLAVSGSVTTGAGAGSGTGSSNSNS 557
                                                                             
  Fly  1125 ----------------------------------------------------------------- 1124

  Fly   558 NSGGSSGSVSGSVSGSGSHPGTPTSLHAHSANGTSSSLLGGGLHLATPHQMVAAGGSPVMLHQQQ 622
                       .|.|                                               :||
  Fly  1125 -----------KVRG-----------------------------------------------EQQ 1131

  Fly   623 QQQQHQQQQQQQQQQQHQQQQQQQHQQQQQQHQQQQQQH 661
            ||||.|||||||||||..||||:||....|||||.||.|
  Fly  1132 QQQQQQQQQQQQQQQQQLQQQQEQHHLSLQQHQQYQQHH 1170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sp1NP_001259388.1 SP6-9-like_N 50..386 CDD:411694 81/347 (23%)
C2H2 Zn finger 390..409 CDD:275368 4/18 (22%)
zf-H2C2_2 401..428 CDD:463886 11/26 (42%)
C2H2 Zn finger 417..439 CDD:275368 9/21 (43%)
zf-H2C2_2 431..454 CDD:463886 12/22 (55%)
zf-C2H2 445..467 CDD:395048 9/21 (43%)
C2H2 Zn finger 447..467 CDD:275368 8/19 (42%)
srNP_001262693.1 zf-C2H2 1036..1060 CDD:395048 5/23 (22%)
C2H2 Zn finger 1038..1060 CDD:275368 5/21 (24%)
zf-H2C2_2 1052..1077 CDD:463886 11/26 (42%)
C2H2 Zn finger 1068..1088 CDD:275368 9/21 (43%)
zf-H2C2_2 1080..1105 CDD:463886 13/24 (54%)
C2H2 Zn finger 1096..1116 CDD:275368 8/19 (42%)

Return to query results.
Submit another query.