DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sp1 and l(3)neo38

DIOPT Version :10

Sequence 1:NP_001259388.1 Gene:Sp1 / 31913 FlyBaseID:FBgn0020378 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001262485.1 Gene:l(3)neo38 / 41423 FlyBaseID:FBgn0265276 Length:455 Species:Drosophila melanogaster


Alignment Length:535 Identity:124/535 - (23%)
Similarity:181/535 - (33%) Gaps:190/535 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 GGSSAGQHSPCAISAASSSSSSGSSGGQSSRSLSSSASTMVNITASRPLASSCAAVGGGSTGSSS 164
            ||..:|.|.   .:|...:.:.|:.|                   :.|.|::.||....:.|:.:
  Fly     8 GGPFSGIHQ---FAAKFDAQTPGAFG-------------------TPPAAAANAAAAAAAAGTDN 50

  Fly   165 -----SASGSQSSSTASAVAAA----YGGDLYFPNTSTSNMDNHHMHQGLLGKVEAGAAA--FGG 218
                 ..:|:..:.....|:||    ||.::..|         :...||.|..:.|.|||  .|.
  Fly    51 HVQRYQTNGNHFNQNVPNVSAANNMQYGQNISIP---------YSQPQGDLNFLNAAAAADHKGK 106

  Fly   219 VYSRHPYDWPFNAVTHKEAASVNSGWWDMHSAAGSWLDMGGAGMHSTMANYASE-NYSS-ALSHS 281
            ::.:...|.. ..:..:...:||..|                   .|:||.|:. :||| .||.:
  Fly   107 IHPKIERDRE-EVLNQQILQNVNQSW-------------------QTLANTANTVDYSSHLLSAT 151

  Fly   282 LLGSGQHLLQ--DTYKSMLPGQGVGVG---VGVGMGGFSLPHSSPSA------------------ 323
            |..|.||.|:  :|.|....|..:..|   ..:.:||.:|..|:..|                  
  Fly   152 LPISIQHFLKYSETIKKESTGDVLKNGTNLASLALGGVALTPSNNGANGGHHNGLVGMDHGGHMT 216

  Fly   324 ----AAAAAATAAAA---------------AGGSPQGGSPST----------------------- 346
                |..||.|..|:               ||.....||..|                       
  Fly   217 NMTDANGAALTNGASNGVNGNANGTVTNGGAGAVSSSGSVGTTNASGGTGTASGKKTKKKKPPKE 281

  Fly   347 ----PSP---RSQRRYAGRATCDCPNCQEA--ERLGPAGVHLRKKNIHS--------CHIPGCGK 394
                |.|   |..:...|.....||.||.|  :|      .|.::::.|        |.|  |..
  Fly   282 KKPRPKPGEIRETKALDGSTLYCCPECQMAYPDR------SLIEQHVISHAVERRFVCDI--CNA 338

  Fly   395 VYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELQRHLRTHTGEKRFACPVCNKRFMRSDH 459
            ...:..||..|...|..:||.|||  .|.|.|.|.::|..|:..|:|||:..|..|.|.|.|.||
  Fly   339 ALKRKDHLTRHKLSHIPDRPHVCN--ICMKSFKRKEQLTLHIVIHSGEKKHVCIECGKGFYRKDH 401

  Fly   460 LAKHVKTHNGTANHQANGHNGGLKKGSSESCSDSEEAANQSGESNGLGGVGSGPQTGGAGGGGGG 524
            |.||.::|..             ::..||.                     |.....|:.|||||
  Fly   402 LRKHTRSHIA-------------RRVKSEV---------------------SAQNVNGSAGGGGG 432

  Fly   525 SSSGNGAGTLAVSGS 539
            ...||.|.:.|:.||
  Fly   433 GGGGNSAQSNALHGS 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sp1NP_001259388.1 SP6-9-like_N 50..386 CDD:411694 75/372 (20%)
C2H2 Zn finger 390..409 CDD:275368 4/18 (22%)
zf-H2C2_2 401..428 CDD:463886 12/26 (46%)
C2H2 Zn finger 417..439 CDD:275368 8/21 (38%)
zf-H2C2_2 431..454 CDD:463886 9/22 (41%)
zf-C2H2 445..467 CDD:395048 10/21 (48%)
C2H2 Zn finger 447..467 CDD:275368 10/19 (53%)
l(3)neo38NP_001262485.1 C2H2 Zn finger 305..325 CDD:275368 7/25 (28%)
C2H2 Zn finger 333..353 CDD:275368 6/21 (29%)
COG5048 341..>455 CDD:227381 45/143 (31%)
C2H2 Zn finger 361..381 CDD:275368 8/21 (38%)
C2H2 Zn finger 389..409 CDD:275368 10/19 (53%)

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