DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sp1 and sp3b

DIOPT Version :9

Sequence 1:NP_001259388.1 Gene:Sp1 / 31913 FlyBaseID:FBgn0020378 Length:726 Species:Drosophila melanogaster
Sequence 2:XP_005165855.1 Gene:sp3b / 322961 ZFINID:ZDB-GENE-110815-3 Length:783 Species:Danio rerio


Alignment Length:655 Identity:181/655 - (27%)
Similarity:237/655 - (36%) Gaps:272/655 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 PAAGSSGSSGGGGGGGGSSAGQHSPCAISAASSSSSSGSSG----------GQSSRSLSSSAS-- 137
            |:.|..||:|.......:.|||..|..::|  ....:|::|          |....|||.:||  
Zfish   205 PSGGLLGSNGQYVVPLQTMAGQTQPVFVTA--GVDGTGANGVQYQVIPQLQGADGASLSYTASAA 267

  Fly   138 --------------------TMVNITASRPLAS-----------SCAAVGGGSTG---------- 161
                                |..|....:.|.|           |.|..|.|:.|          
Zfish   268 DGSTLGTDIAILPDGTQGIATATNANDLQGLLSQSGHVQQIPTVSLAGSGFGTQGQVVANMGLPG 332

  Fly   162 ---------------SSSSASGSQSSSTASAVAAAYGGDLYFPNTSTSNMDNHHMHQGLLGKV-- 209
                           .|...:|:|  :.|::|.|  .|.|.....:|:..||    ||..||.  
Zfish   333 NITLVPINSLSNVDLESLGLAGAQ--TIATSVTA--DGQLIMTGPTTTTSDN----QGESGKCTE 389

  Fly   210 -----EAGAAAF------------------GGVYSRHPYDWPFNAVTHKEAASVNSGWWDMHSAA 251
                 :|.|.||                  .||.:              :|.:|::|..|:    
Zfish   390 SLNANDANANAFVPTTTSSTSTSLPETIDGTGVLT--------------QATAVSAGHQDL---- 436

  Fly   252 GSWLDM----GGAGMHSTMANYASENYSSAL-SHSLLGSGQHLLQ------------DTYKSMLP 299
             |::..    ||..:...:....::..:..| |..||.:|..|:|            .|::.   
Zfish   437 -SYIQQNHTTGGEQVVQLLPAQTADGAAQTLQSVQLLNAGTFLIQAQTVSPTGQIQWQTFQV--- 497

  Fly   300 GQGVGVGVGVGMGGFSLPH----SSPSAAAAAAATAAAAAGGSPQGGSPSTPS------------ 348
             |||     ..:....||.    |||....|...|.:....|: .|.....|:            
Zfish   498 -QGV-----QNLQNLQLPAAGGVSSPQITLAPVQTLSLGQSGT-TGALGQIPNLQTVTVNSVGQY 555

  Fly   349 -----------------------PRS------------------------QRRYAGRATCDCPNC 366
                                   |.|                        :.:...|..|.||||
Zfish   556 QQDENTESHTDIQIKEEPESDDWPNSTLSTSDLAHLRVRLVEEDMEGTGQEGKRLRRVACTCPNC 620

  Fly   367 QEAERLGPAGVHLRKKNIHSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDE 431
            :||   |..|..:.||..|.||||||||||||||||:||||||:|||||:|:|.:||||||||||
Zfish   621 KEA---GGRGSSMGKKKQHICHIPGCGKVYGKTSHLRAHLRWHSGERPFICSWSYCGKRFTRSDE 682

  Fly   432 LQRHLRTHTGEKRFACPVCNKRFMRSDHLAKHVKTHNGTANHQANGHNGGLKKGSSESCSDSEEA 496
            ||||.|||||||:|.||.|:||||||||||||:|||..             |||           
Zfish   683 LQRHRRTHTGEKKFVCPECSKRFMRSDHLAKHIKTHQN-------------KKG----------- 723

  Fly   497 ANQSGESNGLGGVGSGPQTGGAGGGGGGSSSGNGAGTLAVSGSVTTGAGA--------GSGTGSS 553
                  .|...|||   ||..|                |.|.::.||.||        .:||...
Zfish   724 ------LNSNTGVG---QTEAA----------------APSDTIITGGGATVILANLQQAGTQDL 763

  Fly   554 NSNSN 558
            .|||:
Zfish   764 LSNSD 768

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sp1NP_001259388.1 C2H2 Zn finger 390..409 CDD:275368 17/18 (94%)
zf-H2C2_2 401..428 CDD:290200 20/26 (77%)
C2H2 Zn finger 417..439 CDD:275368 17/21 (81%)
zf-H2C2_2 431..454 CDD:290200 17/22 (77%)
zf-C2H2 445..467 CDD:278523 17/21 (81%)
C2H2 Zn finger 447..467 CDD:275368 16/19 (84%)
sp3bXP_005165855.1 THAP 8..85 CDD:283206
C2H2 Zn finger 638..660 CDD:275368 20/21 (95%)
COG5048 <651..728 CDD:227381 60/106 (57%)
zf-C2H2 666..690 CDD:278523 18/23 (78%)
C2H2 Zn finger 668..690 CDD:275368 17/21 (81%)
zf-H2C2_2 682..705 CDD:290200 17/22 (77%)
zf-C2H2 696..718 CDD:278523 17/21 (81%)
C2H2 Zn finger 698..718 CDD:275368 16/19 (84%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23235
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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