DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sp1 and Zfp353

DIOPT Version :9

Sequence 1:NP_001259388.1 Gene:Sp1 / 31913 FlyBaseID:FBgn0020378 Length:726 Species:Drosophila melanogaster
Sequence 2:XP_233185.6 Gene:Zfp353 / 298232 RGDID:1310095 Length:551 Species:Rattus norvegicus


Alignment Length:576 Identity:119/576 - (20%)
Similarity:196/576 - (34%) Gaps:181/576 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 HLQKPQVNPD-HPSLRGTPLAMLAAQCNKLSNKSPPPLADAAVGKG----FHPWKKSPNSPA--- 86
            :|:.||...| :..:..||.|.....|    |..|.|:..:.:..|    ...|||:..:.|   
  Rat    10 NLKSPQAFCDAYMDVAETPGASQTVPC----NTQPSPVESSQLVSGQSSEMPTWKKTVMASACCN 70

  Fly    87 ----AGSSGSSGGGGGGGGSSAGQHSPCA------ISAASSSSSSGS------------------ 123
                |.:..|:...|.......|:.|..|      :||...||.:||                  
  Rat    71 PQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLK 135

  Fly   124 -----------SGGQSSRSLSSSASTMVNITAS-----RPLASSCAAVGGGSTGSSSSAS---GS 169
                       :.|...|:|:|..:.::.||..     |.|.:...|..|...|.:.:..   .|
  Rat   136 TEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDS 200

  Fly   170 QSSSTASAVAAAYGGDLYF-PNTS----TSNMDNHHMHQGLLGKVEAGAAAFGGVYSRHPYDWPF 229
            .|:.|       :.|||.. |:.:    |.........|...|..:....|....|:        
  Rat   201 VSNQT-------FIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYA-------- 250

  Fly   230 NAVTHKEAASVNSGWWDMHSAAGSWLDMGGAGMHSTMANY-----ASENYSSALSHSLLGSGQHL 289
                  :...:.:|:...:....|             .||     ..:|....  ..:|.||:||
  Rat   251 ------DQKILPNGYQTFYEPQMS-------------TNYQITCVCGQNVCRC--QEILLSGEHL 294

  Fly   290 L-----------QDTYKSMLPGQGVGVGVGVGMGGFSLPHSS----------------------P 321
            |           ||...::.....:|   |..:....:|:|:                      |
  Rat   295 LSEYQTSGYRYDQDLIVNLQVTSPIG---GEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHP 356

  Fly   322 SAAAAAAAT------------AAAAAGGS---PQGGSPSTPSPRSQRRYAGRA--TCDCPNCQ-E 368
            ..:.::..|            ...:..|:   .:...|...|..:|..|.|.:  |.:.|..| :
  Rat   357 ETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQ 421

  Fly   369 AERLGPA-----GVH------------LRKKNIHS-----CHIPGCGKVYGKTSHLKAHLRWHTG 411
            .:.:..|     |.|            :..||.|:     |...||.|.|.|:.|||.|::.|||
  Rat   422 PQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTG 486

  Fly   412 ERPFVCNWLFCGKRFTRSDELQRHLRTHTGEKRFACPVCNKRFMRSDHLAKHVKTH 467
            .:|::||...|..:|.|..:|.||.:.|:||:.:.||:|||.:.|..:|.:|:::|
  Rat   487 VKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSH 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sp1NP_001259388.1 C2H2 Zn finger 390..409 CDD:275368 9/18 (50%)
zf-H2C2_2 401..428 CDD:290200 12/26 (46%)
C2H2 Zn finger 417..439 CDD:275368 8/21 (38%)
zf-H2C2_2 431..454 CDD:290200 11/22 (50%)
zf-C2H2 445..467 CDD:278523 8/21 (38%)
C2H2 Zn finger 447..467 CDD:275368 8/19 (42%)
Zfp353XP_233185.6 C2H2 Zn finger 462..484 CDD:275368 10/21 (48%)
C2H2 Zn finger 492..514 CDD:275368 8/21 (38%)
zf-H2C2_2 506..531 CDD:290200 11/24 (46%)
C2H2 Zn finger 522..542 CDD:275368 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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