DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hecw and UPL1

DIOPT Version :10

Sequence 1:NP_572574.2 Gene:Hecw / 31905 FlyBaseID:FBgn0261931 Length:1426 Species:Drosophila melanogaster
Sequence 2:NP_001185245.1 Gene:UPL1 / 842036 AraportID:AT1G55860 Length:3681 Species:Arabidopsis thaliana


Alignment Length:1628 Identity:371/1628 - (22%)
Similarity:598/1628 - (36%) Gaps:528/1628 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 QP--LAASSACLADR---------SPVDPIAVR------LQQE-----------EQAEGDDEEEE 47
            ||  |:||.|.|.:.         :||:.:..|      :|::           |...||..|..
plant  2366 QPSSLSASIAQLIEEHFISNLRASAPVNTVVERETNTTEIQEQLHPDVPPSVGSETVLGDGNEGG 2430

  Fly    48 EEEEDDDDDPKEEEAFYEARNGNES-----DELEQAFQS-----ALTLTNDVHVSVSEVEEHEP- 101
            ::.|:           .|..|.||:     |.:.::|..     |..::.|...|:.::|..:| 
plant  2431 QQSEE-----------RELLNNNENVNNPPDVMAESFAQGQANLASPVSQDTGESLQQLEVMQPL 2484

  Fly   102 PLASRNQE-------------VAEVEEQQQQLGACALPQPSEASLTGSKETREPRHHQTLLSTKS 153
            ||.|...|             :.:|:.:...|.:.|..||..:|:..             :|..:
plant  2485 PLNSTPNEIDRMEVGEGDGAPIDQVDHEAVHLISTAQGQPDTSSIQN-------------VSVTA 2536

  Fly   154 CETPANNATLSPTNSYNGSIGSDGGSSVGGGARRKSWTLSPQSGGSTPLSGAKKKTKTGAPTTTL 218
            ...|.::    |.:::..|:..|..|....|         .||...:||.|...:..:...|..:
plant  2537 IAPPVDD----PDSNFQPSVDVDMSSDGAEG---------NQSVQPSPLDGDNNELSSMEATENV 2588

  Fly   219 SNANGDGFNLWVARECFETVPAEMVDTLSMAEVDEEVDEEEDE----EAAAVESLLGAAAALQAS 279
            .|                               ||:|:|...:    |..|::.....|......
plant  2589 RN-------------------------------DEQVEEGSLDGRAPEVNAIDPTFLEALPEDLR 2622

  Fly   280 AHVQRRQQQQHHQHLRQPSPPQHRPLERSWPP---------RAVGRDLKLQGDVFQFDILDTDER 335
            |.|...||.|..|      ||.:.|     ||         .|:..|:       |.::| ..:|
plant  2623 AEVLASQQAQSVQ------PPTYEP-----PPVDDIDPEFLAALPPDI-------QTEVL-AQQR 2668

  Fly   336 LAEEMAQGSGSS----NNSPLATPPVRFKPLLKKKIGPDSYINTISTQKVPVHQSYEFPTFPSSS 396
            ....:.|..|.:    |.|.:||.|...:                           |.....||.
plant  2669 AQRMVQQSQGQAVDMDNASIIATLPADLR---------------------------EEVLLTSSE 2706

  Fly   397 AVGSSSSSPNSLQFPYLRQHRPLTRALSNGKASSSEEQASPRLLLSPKRPRSPPSGCSTRSASPL 461
            ||.::..||...:...||.     ||:|:.:|.||...:|.||       .:..:|......:.:
plant  2707 AVLAALPSPLLAEAQMLRD-----RAMSHYQARSSVFGSSHRL-------NNRRNGLGYNRLTGM 2759

  Fly   462 DISLSPEQHSPTRGRGVGGAL-QDAVP-----------PGTPTFH-----------------GQR 497
            |             ||||..: |.||.           .|.|..:                 |:.
plant  2760 D-------------RGVGVTIGQRAVSSSADGLKVKEIEGDPLVNADALKSLIRLLRLAQPLGKG 2811

  Fly   498 PQQRLLKRVGGGAGAGATGGATGSPLVCPPTPTHHAR----RHARLQAVTANSSLASGGAIPSDP 558
            ..||||..:...:...|........::.|...|..:.    ...||....:|........:...|
plant  2812 LLQRLLLNLCAHSFTRANLVQLLLDMIRPEMETSPSELAITNPQRLYGCQSNVVYGRSQLLNGLP 2876

  Fly   559 PAV---------------SSQLDYIYLQDG---GQEQGQEQSDEVVHISSTRLPSIPERSAAAAA 605
            |.|               |:..|.::..|.   .|...::..::|.|::.:|...||        
plant  2877 PLVFRRVLEVLTYLATNHSAVADMLFYFDSSLLSQLSSRKGKEKVTHVTDSRDLEIP-------- 2933

  Fly   606 AAAAAAAGAALMEPGTGTVSGSSGAGAAGEPPLPPAWEARMDSH-----GRIFYIDHT--TRTTS 663
                ......|:                ..|.|     .:..||     |.:..:.:|  :|...
plant  2934 ----LVVFLKLL----------------NRPQL-----LQSTSHLGLVMGLLQVVVYTAASRIEG 2973

  Fly   664 WQRPGAAPSGG--------PAGREQHHRQQLDRRYQSIRR---TITNESRAAQLYN----LPTSA 713
            |     :||.|        |.|.|.....:.|...:.:..   ::......|::||    ||.|.
plant  2974 W-----SPSSGVPEKLENKPVGEEASSETRKDAESELVGEADLSVARRKNCAEIYNIFLQLPQSD 3033

  Fly   714 NSNANSTAPAAPPPATAIHPAILMLCRPDFYSLLHTNEAALAIYNRNAALKHMVMRIRRDPPCFQ 778
            ..|                     ||     .||.....:..||    :|...|::.........
plant  3034 LCN---------------------LC-----ILLGYEGLSDKIY----SLAGEVLKKLAAVDVAH 3068

  Fly   779 RYQYNKDLVALVNTFAQMS-RELPSCWETKLDQSGKQFFIDHQHRRTSFM-------------DP 829
            |..:.|:|..|.::.:..: |||.:.       |.||    ...|.|..|             ..
plant  3069 RKFFTKELSELASSLSSSTVRELATL-------SSKQ----KMSRSTGSMAGASILRVLQVLSSL 3122

  Fly   830 RLPVECPRVVRHRQQHSQQQS-------SVGYYYPDLVDGNCLSATSGHI-------NASPASSV 880
            ..|::...|...|:...::|:       ::...:.:|  ..|:|.|...:       |.:|...|
plant  3123 TSPIDESNVGTERETEQEEQNIMQRLNVALEPLWHEL--SQCISMTELQLDHTAAASNINPGDHV 3185

  Fly   881 SGVPPLPPPRPSS-----------------------------SSSSSRSSHGHGHNCNTTSAISC 916
            .|:.|.....|.:                             ::...:.|..||.:..|      
plant  3186 LGISPTSSLSPGTQRLLPLIEAFFVLCEKIQTPSMLQQDTNVTAGEVKESSAHGSSSKT------ 3244

  Fly   917 ALNADRSAYGAAGMASAGATAAGYEDVPIAYNEK----VIAFLRQ-PNILEILRERQGQHTMSRQ 976
            ::::.:...|:...:.              :.||    :.:|:|| |::||        .::|..
plant  3245 SVDSQKKTDGSVTFSK--------------FAEKHRRLLNSFIRQNPSLLE--------KSLSMM 3287

  Fly   977 LREKINILRVEGVPALERLGHDLQLTILLSLFEQEIMGFVPIEERSPQGSPVLNSRMPQRAPPPF 1041
            |:                                                            .|.
plant  3288 LK------------------------------------------------------------APR 3292

  Fly  1042 RRDFEAKLRSFYRKLESKGYGQ---GPHKLKLHIRRSHLLEDAFRRIMSANKKDLQRGRLAVLWD 1103
            ..||:.| ::::|......:.|   ||  |::.:||:::|||::.::...:.:|| :|||.|.:.
plant  3293 LIDFDNK-KAYFRSRIRHQHDQHISGP--LRISVRRAYVLEDSYNQLRMRSPQDL-KGRLNVQFQ 3353

  Fly  1104 TEEGLDYGGPSREFFFLLSRELFNPYYGLFEYSANDTYTVQVSPLSAFVDNCHDWFRFSGRVLGL 1168
            .|||:|.||.:||::.||||.:|:....||....||. |.|.:|.|.:......:|:|.||::..
plant  3354 GEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNDA-TFQPNPNSVYQTEHLSYFKFVGRMVAK 3417

  Fly  1169 ALVHQYLLDAFFTRPFYKALLRLPVALSDLESLDNEFHQSLQWIRDNDIGTGVDLGLTFCVTEE- 1232
            ||....|||.:|||.|||.:|.:.|...|:|::|.:::::|:|:.:||:...:||..:....|| 
plant  3418 ALFDGQLLDVYFTRSFYKHILGVKVTYHDIEAVDPDYYKNLKWLLENDVSDILDLTFSMDADEEK 3482

  Fly  1233 -LL---GSVVDRELKPGGKNIIINEKNKKEYLERMIKWRLERGVQEQTESLVRGFYEVIDSRLVS 1293
             :|   ..|.|.||||||:||.:.|:.|.||::.:....|...::.|..:.:.||.|:|...|||
plant  3483 HILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVAGHILTNAIRPQINAFLEGFNELIPRELVS 3547

  Fly  1294 VFDARELELVIAGTAEIDTNDWRLNTEYRSGYHDNHQVIVWFWQVIERFSNEQRLRLLQFVTGTS 1358
            :|:.:||||:|:|..|||.:|.:.||||.| |.....||.|||:|::.||.|...|.||||||||
plant  3548 IFNDKELELLISGLPEIDFDDLKANTEYTS-YTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTS 3611

  Fly  1359 SIPYEGFSALRGSTGPRRFCIEK-WGKPNALPRAHTCFNRLDLPPYPTPELLYEKLLLAVEETNT 1422
            .:|.|||.||:|.:||:|..|.| :|.|..||.||||||:||||.|.:.|.|.|:||||:.|.:.
plant  3612 KVPLEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQERLLLAIHEASE 3676

  Fly  1423 -FG 1424
             ||
plant  3677 GFG 3679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HecwNP_572574.2 PHA03247 <411..562 CDD:223021 36/198 (18%)
WW 638..667 CDD:459800 7/35 (20%)
HECW1_helix 738..794 CDD:465766 12/55 (22%)
HECTc 1068..1424 CDD:238033 155/362 (43%)
UPL1NP_001185245.1 DUF908 88..357 CDD:428721
DUF913 418..763 CDD:461803
UBA_atUPL1_2_like 1273..1310 CDD:270512
UBM 2603..2631 CDD:464159 6/27 (22%)
UBM 2641..2672 CDD:464159 8/43 (19%)
HECTc 3319..3679 CDD:238033 155/362 (43%)
Blue background indicates that the domain is not in the aligned region.

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