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Protein Alignment CG42797 and herc4

DIOPT Version :9

Sequence 1:	NP_572574.2	Gene:	CG42797 / 31905	FlyBaseID:	FBgn0261931	Length:	1426	Species:	Drosophila melanogaster
Sequence 2:	XP_005173092.1	Gene:	herc4 / 557513	ZFINID:	ZDB-GENE-070801-1	Length:	1052	Species:	Danio rerio

Alignment Length:	1024	Identity:	236/1024 - (23%)
Similarity:	366/1024 - (35%)	Gaps:	268/1024 - (26%)

- Green bases have known domain annotations that are detailed below.

  Fly   547 SLASGGAIPSDPPAVSSQLDYIYLQDGGQEQGQEQSDEVVHISSTRLPSIP--ERSAAAAAAAAA 609
            :||.||.|.|.......||..      ||:.....|.:|:.    .|..||  :.||..|.:...
Zfish   151 ALARGGEIFSWGQNKYGQLGL------GQQGACVCSPQVIQ----SLQGIPFGQISAGGAHSFGL 205

  Fly   610 AAAGAALMEPGTG-TVSGSSGAGAAGEPPLPPAWEARMDSHGRIFYI----DHTTRTTSWQRPGA 669
            ..:||..   |.| ...|..|.|...:...|...:.....  ::.||    |||...|  :..|.
Zfish   206 TLSGAIF---GWGRNKFGQLGLGDNDDRRFPVLLKTLRSQ--QVVYICCGEDHTAALT--KEGGV 263

  Fly   670 APSG----GPAGREQHHRQQLDRRYQSIRRTITNE---SRAAQLYNLPTS--------------- 712
            ...|    |..|....:.:...|:...:..::.::   .|...|..:|:|
Zfish   264 FTFGAGGYGQLGHNSTNHEVNPRKVFELMGSVVSQIACGRQHTLAFIPSSGKIDSFGLGGNGQLG 328

  Fly   713 ANSNANSTAPA---------APPPATAIHPAILMLCRPDFYSLLHTNEAALAIYNRNAALKH--- 765
            ..|..|..:|.         |.|.|.....|....|....|:   ..:.:.|.|    ||..
Zfish   329 TRSTCNRISPTPVKGCWRAHADPVAMDHSEAERSYCVKRIYA---GGDQSFAHY----ALSEDDG 386

  Fly   766 --MVMRIRRDPPCFQRYQYNKDLV------ALVNTFAQMSREL------PSCWETKLDQSGKQFF 816
              :.:||.|  |..|.|..:.:|:      .|....|:::.|:      .||.......|.
Zfish   387 PPLDVRITR--PAGQIYTLSTELIQKWLNHGLGRIPAEITDEIDLVFSSASCLNGSFLSSS---- 445

  Fly   817 IDHQHRRTSFMDPRLPVECPRVVRHR--QQHSQQQSSVGYYYPDLVDGNCLSATSGHINASPASS 879
             :..|..||.....:.:...|::.|:  |....|.|.:             .|.|...|..|  .
Zfish   446 -NPDHYSTSSKCSGVDINTARLLFHKLIQTDHPQISQI-------------IAASLEKNLLP--K 494

  Fly   880 VSGVPP----------LPPPRPSSSSSSSRSSHGHGHNCNTTSAISCALNADRSAYGAAGMASAG 934
            :|..||          ||                           .|.|..:.:.:....:..|.
Zfish   495 LSSSPPDIEALRLYLTLP---------------------------ECPLLCNPNNFTTLTIPFAK 532

  Fly   935 ATAAGYEDVPI--------------------AYNEKVIAFLRQP--------------------N 959
            |..: .:|.||                    .|.|.|:..||..                    .
Zfish   533 AIVS-LKDAPIKVLGNWWSRFEPVVFQRLVELYKEVVVYLLRMQKLGIPLSEQRIFTCFLDTSLK 596

  Fly   960 ILEIL---RERQGQHTMSRQLREKINILRVEGVPALERLGHDLQLTI-----LLSLFEQEIMGFV 1016
            :||||   .||.||...    .:|..|             |:|...|     ..:.|:|::.
Zfish   597 LLEILHSVNERAGQIIQ----YDKFYI-------------HELDELIDIRNDYATWFQQQMF--- 641

  Fly  1017 PIEERSPQGSPVLNSRMPQRAPPPFRRDFEAKL-------------------RSFYRKLESKGYG 1062
                     |.|::|:: .....||..|.:||.                   |..:..|...|.|
Zfish   642 ---------SVVMDSQV-TLCKYPFVFDAQAKTALLQTDAVIQMQMAVDQAQRQNFTSLFLSGGG 696

  Fly  1063 QGPHK--LKLHIRRSHLLEDAFRRIMSANKKDLQRGRLAVLWDTEEGLDYGGPSREFFFLLSREL 1125
            .....  |.|.:||.:::.|:...:..:...|.:: .|.|::..||.:|.||..:|||.|:.:||
Zfish   697 VESVNPCLILIVRRENVVGDSMEVLRKSKNVDYKK-PLKVIFVGEEAVDAGGVRKEFFLLIMKEL 760

  Fly  1126 FNPYYGLFEYSANDTYTVQVSPLSAFVDNCH-----DWFRFSGRVLGLALVHQYLLDAFFTRPFY 1185
            .:|.||:|.:.       :.|.|..|.  |.     |.|...|.|.|||:.:..:::..|....|
Zfish   761 LHPKYGMFRFH-------EESRLIWFA--CKTFEDIDLFHLIGVVCGLAIYNLTIVELNFPLALY 816

  Fly  1186 KALLRLPVALSDLESLDNEFHQSLQWIRDNDIGTGVDLGLTFC----VTEELLGSVVDRELKPGG 1246
            |.||:....|.||:.|..:..:|||.:.|.   |..||..|||    :||:..|:....||.|.|
Zfish   817 KKLLKKTPTLEDLKELMPDVGRSLQQLLDY---TEDDLEETFCLNFTITEDNFGATEVVELIPNG 878

  Fly  1247 KNIIINEKNKKEYLERMIKWRLERGVQEQTESLVRGFYEVIDSRLVSVFDARELELVIAGTAEID 1311
            .:|.:|:.|::|::...:.:...:.|..|..:...||::|...:::.:|...||:.::.|....|
Zfish   879 TDISVNKSNRQEFVNAYVDYIFNKSVAPQFSAFYAGFHKVCGGKVLELFQPSELQAMVIGNTNYD 943

  Fly  1312 TNDWRLNTEYRSGYHDNHQVIVWFWQVIERFSNEQRLRLLQFVTGTSSIPYEGFSALRGSTGPRR 1376
            ..:...:|||:..|..:|..|..||:|......|::.:.|.|:||:..||..|..:|.....|..
Zfish   944 WKELEKSTEYKGEYWADHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLALVIQPTA 1008

  Fly  1377 FCIEKWGKPNALPRAHTCFNRLDLPPYPTPELLYEKLLLAVEETNTFGI 1425
                  |.....|.||||||.||||.|.:...:.||||.|:|....|.:
Zfish  1009 ------GGEQYFPVAHTCFNLLDLPKYTSKNTMQEKLLHAIEHNQGFNL 1051

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.