DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hecw and Herc3

DIOPT Version :10

Sequence 1:NP_572574.2 Gene:Hecw / 31905 FlyBaseID:FBgn0261931 Length:1426 Species:Drosophila melanogaster
Sequence 2:NP_001102101.1 Gene:Herc3 / 362377 RGDID:1307803 Length:1050 Species:Rattus norvegicus


Alignment Length:520 Identity:143/520 - (27%)
Similarity:237/520 - (45%) Gaps:86/520 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   943 VPIAYNEKVIAFLRQPNILEILRERQGQHTMSRQLREKINILRVEGVPALERLGHDL----QLTI 1003
            :|:.:|..:.|.|:   :||.|              .|:| |:|:.|.      :|.    :::.
  Rat   579 IPVLFNNYMTATLK---LLEKL--------------YKVN-LKVKHVE------YDKFYIPEISS 619

  Fly  1004 LLSLFEQEIMGFVPIEERSPQGSPVLNSRMPQRAPPPFRRDFEAKLRSFYRKLESKG-------- 1060
            |:.:.|..:|.|  :.:...:..|.:..........||..|.:||.:......|.:.        
  Rat   620 LVDIQEDYLMWF--LHQSGMKARPSIMQDAVTLCSYPFIFDAQAKTKMLQTDAELQMQVAVNGAN 682

  Fly  1061 -------------YGQGPHKLKLHIRRSHLLEDAFRRIMSANKKDLQRGRLAVLWDTEEGLDYGG 1112
                         ..:.|. |.||:||:||:.||.|.:...:..||:: .|.|::|.|||:|.||
  Rat   683 LQNVFMLLTLEPLLARSPF-LVLHVRRNHLVGDALRELSIHSDIDLKK-PLKVIFDGEEGVDAGG 745

  Fly  1113 PSREFFFLLSRELFNPYYGLFEYSANDTYTVQVSPLSAFVDNC---HDWFRFSGRVLGLALVHQY 1174
            .::|||.||.:||.||.||:|.|       .|.|.|..|.|.|   |:||...|...|||:.:..
  Rat   746 VTKEFFLLLLKELLNPIYGMFTY-------YQDSNLLWFSDTCFVEHNWFHLIGITCGLAIYNST 803

  Fly  1175 LLDAFFTRPFYKALLRLPVALSDLESLDNEFHQSLQWIRDNDIGTGVDLGLTFC----VTEELLG 1235
            ::|..|....||.||.:..:|.||:.|.....:|||.:.|.   .|.|:..|||    |..|..|
  Rat   804 VVDLHFPLALYKKLLNVKPSLEDLKELSPTEGRSLQELLDY---PGEDIEETFCLNFTVCRESYG 865

  Fly  1236 SVVDRELKPGGKNIIINEKNKKEYLERMIKWRLERGVQEQTESLVRGFYEVIDSRLVSVFDAREL 1300
            .:..::|.|||..:.:.:.|::|:::..:.:..:..|.|...:...||.:|...:::.:|...||
  Rat   866 VIEQKKLIPGGDRVAVCKDNRQEFVDAYVNYIFQISVHEWYTAFSSGFLKVCGGKVLELFQPAEL 930

  Fly  1301 ELVIAGTAEIDTNDWRLNTEYRSGYHDNHQVIVWFWQVIERFSNEQRLRLLQFVTGTSSIPYEGF 1365
            ..::.|.:..:..:......|:..|...|..:..||:....|..|::.|.|.|:||:..||..|.
  Rat   931 RAMMVGNSNYNWEELEETAVYKGDYSSTHPTVKLFWETFHEFPLEKKKRFLLFLTGSDRIPIYGM 995

  Fly  1366 SALR-----GSTGPRRFCIEKWGKPNALPRAHTCFNRLDLPPYPTPELLYEKLLLAVEETNTFGI 1425
            ::|:     .:||           .:.||.||||:|.||||.|.:.|::..:|..|::....|.:
  Rat   996 ASLQIVIQSTATG-----------EDYLPVAHTCYNLLDLPKYSSKEIMKARLTQALDNYEGFSL 1049

  Fly  1426  1425
              Rat  1050  1049

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HecwNP_572574.2 PHA03247 <411..562 CDD:223021
WW 638..667 CDD:459800
HECW1_helix 738..794 CDD:465766
HECTc 1068..1424 CDD:238033 117/367 (32%)
Herc3NP_001102101.1 ATS1 3..341 CDD:444065
RCC1 313..377 CDD:395335
HECTc 702..1048 CDD:238033 117/367 (32%)
Blue background indicates that the domain is not in the aligned region.

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