DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42797 and Herc6

DIOPT Version :9

Sequence 1:NP_572574.2 Gene:CG42797 / 31905 FlyBaseID:FBgn0261931 Length:1426 Species:Drosophila melanogaster
Sequence 2:XP_008761185.1 Gene:Herc6 / 362376 RGDID:1561739 Length:1027 Species:Rattus norvegicus


Alignment Length:516 Identity:126/516 - (24%)
Similarity:216/516 - (41%) Gaps:103/516 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   961 LEILRERQGQHTMSRQLREKINILRVEGVPALERLGHDLQLTILLSLFEQEIMGFVPIEERSPQG 1025
            ||:::|.|       ::.||.|......||.:|...:   |.:||.:.::       :.|     
  Rat   558 LEMMKEVQ-------KILEKTNSHLHNEVPKMEDTSN---LKVLLEVMKE-------VHE----- 600

  Fly  1026 SPVLNSRMPQRA---PPPFRRDFE----AKLRSFYRKLESKGYGQGPHKLK-------------- 1069
               .|.::|:.|   ...|..:.|    ||.:.|:.|..|..:...|..|.              
  Rat   601 ---ANCQLPENAFIMNDIFNFNTEEGIMAKQQMFFIKYYSMVFNDFPFILDLPSKIILMKHDSSV 662

  Fly  1070 ---------------------LHIRRSHLLEDAFRRIMSANKKDLQRGRLAVLWDTEEGLDYGGP 1113
                                 |.:|||||:||..|::..|...|| |..|:|.:..|...:.||.
  Rat   663 KLSDEVKVAASPEKMGCPFFILKVRRSHLVEDTLRQLRQAEDFDL-RKTLSVGFINEIRPEGGGV 726

  Fly  1114 SREFFFLLSRELFNPYYGLFEYSANDTYTVQVSPLSAFVDNCHDWF----RFS-------GRVLG 1167
            |.|||..:..|:.:|.|.:|.|..|.:               :.||    :|.       |.:.|
  Rat   727 SSEFFHCIFEEMTDPKYEMFMYPENGS---------------NMWFPVNPKFEKSRYFLFGILCG 776

  Fly  1168 LALVHQYLLDAFFTRPFYKALLRLPVALSDLESLDNEFHQSLQWIRDNDIGTGVDLGLTFCVTEE 1232
            |:|.:..:::..|....||.||....:|.||:.|.....::||.:.:.:.|...:|.:.|.:..:
  Rat   777 LSLNNLNVINLSFPLALYKKLLEQKPSLEDLKDLSLLLGRNLQEVLNCEAGVIEELHMYFSIYWD 841

  Fly  1233 LLGSVVDRELKPGGKNIIINEKNKKEYLERMIKWRLERGVQEQTESLVRGFYEVIDSRLVSVFDA 1297
            ..    |.:|.|.|.::.:||.||::|:.:.:.:.....::...:...||||:|.:...:..|..
  Rat   842 QR----DVDLIPDGISVPVNETNKRDYVSKCVDYIFNISIKTIYDEFHRGFYKVCNRDSIRHFQP 902

  Fly  1298 RELELVIAGTAEIDTNDWRLNTEYRSGYHDNHQVIVWFWQVIERFSNEQRLRLLQFVTGTSSIPY 1362
            .||...|.|....|...:..|::|.:||..:|..|:.||:.....:.:::.:.|.|:||...:..
  Rat   903 EELMAAIIGNPTCDWKQFENNSKYENGYSKSHPTILLFWKAFHELTLDEKKKFLLFLTGCDRLHV 967

  Fly  1363 EGFSALRGSTGPRRFCIEKWGKPNALPRAHTCFNRLDLPPYPTPELLYEKLLLAVEETNTF 1423
            :|..    :.|.|..|.|.:.:.:. ||:.||.:.||||.|.|...:.|.|.:|:.....|
  Rat   968 KGLQ----NEGIRFRCPEVFSERDN-PRSLTCHSILDLPKYSTMRRMKEALQVAINNNKGF 1023

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42797NP_572574.2 WW 638..667 CDD:278809
HECTc 1068..1424 CDD:238033 101/402 (25%)
HECTc 1092..1423 CDD:214523 89/341 (26%)
Herc6XP_008761185.1 RCC1 39..88 CDD:278826
RCC1 92..141 CDD:278826
RCC1 144..194 CDD:278826
RCC1_2 182..210 CDD:290274
RCC1_2 236..265 CDD:290274
RCC1 252..299 CDD:278826
HECTc 682..1023 CDD:238033 99/365 (27%)
HECTc 706..1023 CDD:214523 89/341 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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