DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42797 and herc-1

DIOPT Version :9

Sequence 1:NP_572574.2 Gene:CG42797 / 31905 FlyBaseID:FBgn0261931 Length:1426 Species:Drosophila melanogaster
Sequence 2:NP_490834.1 Gene:herc-1 / 171700 WormBaseID:WBGene00021685 Length:1019 Species:Caenorhabditis elegans


Alignment Length:365 Identity:114/365 - (31%)
Similarity:178/365 - (48%) Gaps:19/365 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly  1065 PHKLKLHIRRSHLLEDAFRRIMSANKKDLQRGRLAVLWDTEEGLDYGGPSREFFFLLSRELFNPY 1129
            || |:|.:||..::.|...::...::.|||: .|.|....|:..|.||..:|||.|:.|::....
 Worm   665 PH-LELTVRREFIVSDTMNQMAGLSESDLQK-PLKVNIAGEDADDAGGVRKEFFILVMRKILQSD 727

  Fly  1130 YGLFEYSANDTYTVQVSPL-SAFVDNCHDWFRFSGRVLGLALVHQYLLDAFFTRPFYKALLRLPV 1193
            ||:|. ...:::.|..|.| |.|.|  .:.|...||::||::.:..::...|....||.||..|.
 Worm   728 YGMFS-EDEESHLVWFSGLPSEFCD--REQFHQLGRLVGLSIYNHSIVPFPFPLALYKYLLDTPP 789

  Fly  1194 ALSDLESLDNEFHQSLQWIRDNDIGTGVDL-GLTFCVTEELLGSVVDRELKPGGKNIIINEKNKK 1257
            .|.||..|.....:.|:.:...:.....|: ||.||::..:||.....||..||....:...|:.
 Worm   790 DLEDLCELSPSEGKGLKMLLSYEEDDVEDVFGLNFCISFNILGETHTTELLSGGTEKPVTNANRD 854

  Fly  1258 EYLERMIKWRLERG----VQEQTESLVRGFYEVIDSRLVSVFDARELELVIAGTAEIDTNDWRLN 1318
            ||:...:..|||.|    :.:|.....:||.|.:.||.:..|...||:.:|.|....|.|::|..
 Worm   855 EYVRLYVHHRLELGYNGEIAQQALLFRKGFSESLHSRTLRFFQPCELKEMIVGNENYDWNEFRDI 919

  Fly  1319 TEYRSGYHDNHQVIVWFWQVIERFSNEQRLRLLQFVTGTSSIPYEGFSALRGSTGPRRFCIEKWG 1383
            ..||..|..:|..|..||:.....::::|.:.|||:||::.||..|:..|..:..|        .
 Worm   920 LMYRGEYSSSHPTIQAFWKAFFALTDDERRKFLQFLTGSTRIPVSGWEELHAAIQP--------S 976

  Fly  1384 KPNALPRAHTCFNRLDLPPYPTPELLYEKLLLAVEETNTF 1423
            .|.:||.||||||.||||.......|..:|.:::|.|..|
 Worm   977 APESLPVAHTCFNLLDLPNIADDVELLRRLRISIEHTEGF 1016

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42797NP_572574.2 WW 638..667 CDD:278809
HECTc 1068..1424 CDD:238033 112/362 (31%)
HECTc 1092..1423 CDD:214523 106/336 (32%)
herc-1NP_490834.1 ATS1 2..359 CDD:227511
HECTc 667..1016 CDD:238033 111/360 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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