DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hecw and herc-1

DIOPT Version :10

Sequence 1:NP_572574.2 Gene:Hecw / 31905 FlyBaseID:FBgn0261931 Length:1426 Species:Drosophila melanogaster
Sequence 2:NP_490834.1 Gene:herc-1 / 171700 WormBaseID:WBGene00021685 Length:1019 Species:Caenorhabditis elegans


Alignment Length:365 Identity:114/365 - (31%)
Similarity:178/365 - (48%) Gaps:19/365 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly  1065 PHKLKLHIRRSHLLEDAFRRIMSANKKDLQRGRLAVLWDTEEGLDYGGPSREFFFLLSRELFNPY 1129
            || |:|.:||..::.|...::...::.|||: .|.|....|:..|.||..:|||.|:.|::....
 Worm   665 PH-LELTVRREFIVSDTMNQMAGLSESDLQK-PLKVNIAGEDADDAGGVRKEFFILVMRKILQSD 727

  Fly  1130 YGLFEYSANDTYTVQVSPL-SAFVDNCHDWFRFSGRVLGLALVHQYLLDAFFTRPFYKALLRLPV 1193
            ||:|. ...:::.|..|.| |.|.|  .:.|...||::||::.:..::...|....||.||..|.
 Worm   728 YGMFS-EDEESHLVWFSGLPSEFCD--REQFHQLGRLVGLSIYNHSIVPFPFPLALYKYLLDTPP 789

  Fly  1194 ALSDLESLDNEFHQSLQWIRDNDIGTGVDL-GLTFCVTEELLGSVVDRELKPGGKNIIINEKNKK 1257
            .|.||..|.....:.|:.:...:.....|: ||.||::..:||.....||..||....:...|:.
 Worm   790 DLEDLCELSPSEGKGLKMLLSYEEDDVEDVFGLNFCISFNILGETHTTELLSGGTEKPVTNANRD 854

  Fly  1258 EYLERMIKWRLERG----VQEQTESLVRGFYEVIDSRLVSVFDARELELVIAGTAEIDTNDWRLN 1318
            ||:...:..|||.|    :.:|.....:||.|.:.||.:..|...||:.:|.|....|.|::|..
 Worm   855 EYVRLYVHHRLELGYNGEIAQQALLFRKGFSESLHSRTLRFFQPCELKEMIVGNENYDWNEFRDI 919

  Fly  1319 TEYRSGYHDNHQVIVWFWQVIERFSNEQRLRLLQFVTGTSSIPYEGFSALRGSTGPRRFCIEKWG 1383
            ..||..|..:|..|..||:.....::::|.:.|||:||::.||..|:..|..:..|        .
 Worm   920 LMYRGEYSSSHPTIQAFWKAFFALTDDERRKFLQFLTGSTRIPVSGWEELHAAIQP--------S 976

  Fly  1384 KPNALPRAHTCFNRLDLPPYPTPELLYEKLLLAVEETNTF 1423
            .|.:||.||||||.||||.......|..:|.:::|.|..|
 Worm   977 APESLPVAHTCFNLLDLPNIADDVELLRRLRISIEHTEGF 1016

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HecwNP_572574.2 PHA03247 <411..562 CDD:223021
WW 638..667 CDD:459800
HECW1_helix 738..794 CDD:465766
HECTc 1068..1424 CDD:238033 112/362 (31%)
herc-1NP_490834.1 RCC1 7..56 CDD:395335
ATS1 44..365 CDD:444065
HECTc 667..1016 CDD:238033 111/360 (31%)
Blue background indicates that the domain is not in the aligned region.

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